Analysis of interatomic Contacts of Structural Units in PDB entry:
4Q8H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4Q8H entry

There is 1 chain in PDB entry 4Q8H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 459GLU 1111
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 4Q8H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
476 480Right-handed 310
Helix 2
2
A
515 525Right-handed alpha
Helix 3
3
A
526 536Right-handed alpha
Helix 4
4
A
537 539Right-handed 310
Helix 5
5
A
544 561Right-handed alpha
Helix 6
6
A
567 579Right-handed alpha
Helix 7
7
A
594 601Right-handed alpha
Helix 8
8
A
617 636Right-handed alpha
Helix 9
9
A
642 648Right-handed alpha
Helix 10
10
A
695 703Right-handed alpha
Helix 11
11
A
742 752Right-handed alpha
Helix 12
12
A
833 839Right-handed alpha
Helix 13
13
A
855 859Right-handed alpha
Helix 14
14
A
864 868Right-handed 310
Helix 15
15
A
872 877Right-handed 310
Helix 16
16
A
896 900Right-handed 310
Helix 17
17
A
972 977Right-handed alpha
Helix 18
18
A
996 1009Right-handed alpha
Helix 19
19
A
1016 1025Right-handed alpha
Helix 20
20
A
1029 1033Right-handed 310
Helix 21
21
A
1035 1040Right-handed alpha
Helix 22
22
A
1048 1057Right-handed alpha
Helix 23
23
A
1067 1088Right-handed alpha
Helix 24
24
A
1090 1106Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 4Q8H. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
662 670first strand
Strand 2
A
650 659anti-parallel
Strand 3
A
722 728anti-parallel
Strand 4
A
704 709anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
673 675first strand
Strand 2
A
734 739parallel
Strand 3
A
845 854anti-parallel
Strand 4
A
785 797anti-parallel
Strand 5
A
759 765anti-parallel
Strand 6
A
768 772anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
673 675first strand
Strand 2
A
734 739parallel
Strand 3
A
845 854anti-parallel
Strand 4
A
785 797anti-parallel
Strand 5
A
803 813anti-parallel
Strand 6
A
818 825anti-parallel
Strand 7
A
828 832anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
991 992first strand
Strand 2
A
956 962parallel
Strand 3
A
937 946anti-parallel
Strand 4
A
906 915anti-parallel
Strand 5
A
1011 1013parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il