Analysis of interatomic Contacts of Structural Units in PDB entry:
4Q9J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4Q9J entry

There are 10 chains in PDB entry 4Q9J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 30GLU 1278
C
 VAL 2VAL 2
C
 VAL 4VAL 4
C
 VAL 6VAL 6
D
 VAL 2VAL 2
D
 VAL 4VAL 4
D
 VAL 6VAL 6
B
 VAL 2VAL 2
B
 VAL 4VAL 4
B
 VAL 6VAL 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 4Q9J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
36 40Right-handed 310
Helix 2
2
A
44 88Right-handed alpha
Helix 3
3
A
92 96Right-handed 310
Helix 4
4
A
97 154Right-handed alpha
Helix 5
5
A
155 161Right-handed alpha
Helix 6
6
A
163 183Right-handed alpha
Helix 7
7
A
184 207Right-handed alpha
Helix 8
8
A
208 217Right-handed alpha
Helix 9
9
A
217 232Right-handed alpha
Helix 10
10
A
239 256Right-handed alpha
Helix 11
11
A
256 263Right-handed alpha
Helix 12
12
A
265 319Right-handed alpha
Helix 13
13
A
323 367Right-handed alpha
Helix 14
14
A
399 403Right-handed 310
Helix 15
15
A
427 437Right-handed alpha
Helix 16
16
A
458 465Right-handed alpha
Helix 17
17
A
479 486Right-handed alpha
Helix 18
18
A
492 503Right-handed alpha
Helix 19
19
A
505 512Right-handed alpha
Helix 20
20
A
514 518Right-handed 310
Helix 21
21
A
528 543Right-handed alpha
Helix 22
22
A
558 573Right-handed alpha
Helix 23
23
A
607 615Right-handed alpha
Helix 24
24
A
616 625Right-handed alpha
Helix 25
25
A
694 701Right-handed alpha
Helix 26
26
A
707 737Right-handed alpha
Helix 27
27
A
740 742Right-handed 310
Helix 28
28
A
743 795Right-handed alpha
Helix 29
29
A
796 801Right-handed alpha
Helix 30
30
A
806 826Right-handed alpha
Helix 31
31
A
826 850Right-handed alpha
Helix 32
32
A
852 899Right-handed alpha
Helix 33
33
A
899 907Right-handed alpha
Helix 34
34
A
908 957Right-handed alpha
Helix 35
35
A
966 990Right-handed alpha
Helix 36
36
A
990 1010Right-handed alpha
Helix 37
37
A
1070 1080Right-handed alpha
Helix 38
38
A
1101 1108Right-handed alpha
Helix 39
39
A
1123 1128Right-handed alpha
Helix 40
40
A
1129 1131Right-handed 310
Helix 41
41
A
1137 1148Right-handed alpha
Helix 42
42
A
1150 1155Right-handed alpha
Helix 43
43
A
1159 1162Right-handed 310
Helix 44
44
A
1173 1188Right-handed alpha
Helix 45
45
A
1203 1218Right-handed alpha
Helix 46
46
A
1229 1233Right-handed 310
Helix 47
47
A
1252 1259Right-handed alpha
Helix 48
48
A
1261 1277Right-handed alpha
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There are 5 sheets in PDB entry 4Q9J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 413first strand
Strand 2
A
388 394anti-parallel
Strand 3
A
444 449anti-parallel
Strand 4
A
452 453anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 469first strand
Strand 2
A
547 551parallel
Strand 3
A
577 581parallel
Strand 4
A
418 422parallel
Strand 5
A
593 598parallel
Strand 6
A
601 606anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1049 1056first strand
Strand 2
A
1031 1038anti-parallel
Strand 3
A
1087 1091anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1109 1112first strand
Strand 2
A
1192 1195parallel
Strand 3
A
1222 1225parallel
Strand 4
A
1061 1066parallel
Strand 5
A
1238 1243parallel
Strand 6
A
1246 1251anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1121 1122first strand
Strand 2
A
1164 1165anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il