Analysis of interatomic Contacts of Structural Units in PDB entry:
4QF0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4QF0 entry

There are 6 chains in PDB entry 4QF0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1GLN 441
B
 PRO 1GLN 441
C
 PRO 1GLN 441
D
 PRO 1GLN 441
E
 PRO 1GLN 441
F
 PRO 1GLN 441
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are149 helices in PDB entry 4QF0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 38Right-handed 310
Helix 2
2
A
39 50Right-handed alpha
Helix 3
3
A
72 87Right-handed alpha
Helix 4
4
A
99 112Right-handed alpha
Helix 5
5
A
141 155Right-handed alpha
Helix 6
6
A
155 169Right-handed alpha
Helix 7
7
A
169 174Right-handed alpha
Helix 8
8
A
179 193Right-handed alpha
Helix 9
9
A
194 201Right-handed alpha
Helix 10
10
A
202 205Right-handed 310
Helix 11
11
A
212 216Right-handed 310
Helix 12
12
A
232 235Right-handed 310
Helix 13
13
A
236 244Right-handed alpha
Helix 14
14
A
258 263Right-handed alpha
Helix 15
15
A
263 282Right-handed alpha
Helix 16
16
A
283 296Right-handed alpha
Helix 17
17
A
301 317Right-handed alpha
Helix 18
18
A
321 331Right-handed alpha
Helix 19
19
A
336 351Right-handed alpha
Helix 20
20
A
360 367Right-handed alpha
Helix 21
21
A
368 371Right-handed 310
Helix 22
22
A
372 389Right-handed alpha
Helix 23
23
A
391 400Right-handed alpha
Helix 24
24
A
403 416Right-handed alpha
Helix 25
25
A
422 439Right-handed alpha
Helix 26
26
B
35 38Right-handed 310
Helix 27
27
B
39 50Right-handed alpha
Helix 28
28
B
72 87Right-handed alpha
Helix 29
29
B
99 112Right-handed alpha
Helix 30
30
B
141 155Right-handed alpha
Helix 31
31
B
155 169Right-handed alpha
Helix 32
32
B
169 174Right-handed alpha
Helix 33
33
B
179 193Right-handed alpha
Helix 34
34
B
194 201Right-handed alpha
Helix 35
35
B
202 205Right-handed 310
Helix 36
36
B
212 216Right-handed 310
Helix 37
37
B
232 235Right-handed 310
Helix 38
38
B
236 244Right-handed alpha
Helix 39
39
B
258 263Right-handed alpha
Helix 40
40
B
263 282Right-handed alpha
Helix 41
41
B
283 296Right-handed alpha
Helix 42
42
B
301 317Right-handed alpha
Helix 43
43
B
321 331Right-handed alpha
Helix 44
44
B
336 351Right-handed alpha
Helix 45
45
B
360 367Right-handed alpha
Helix 46
46
B
368 371Right-handed 310
Helix 47
47
B
372 389Right-handed alpha
Helix 48
48
B
391 400Right-handed alpha
Helix 49
49
B
403 416Right-handed alpha
Helix 50
50
B
422 439Right-handed alpha
Helix 51
51
C
35 38Right-handed 310
Helix 52
52
C
39 50Right-handed alpha
Helix 53
53
C
72 87Right-handed alpha
Helix 54
54
C
99 112Right-handed alpha
Helix 55
55
C
141 155Right-handed alpha
Helix 56
56
C
155 169Right-handed alpha
Helix 57
57
C
169 174Right-handed alpha
Helix 58
58
C
179 193Right-handed alpha
Helix 59
59
C
194 201Right-handed alpha
Helix 60
60
C
202 205Right-handed 310
Helix 61
61
C
212 216Right-handed 310
Helix 62
62
C
232 235Right-handed 310
Helix 63
63
C
236 244Right-handed alpha
Helix 64
64
C
258 263Right-handed alpha
Helix 65
65
C
263 296Right-handed alpha
Helix 66
66
C
301 317Right-handed alpha
Helix 67
67
C
321 331Right-handed alpha
Helix 68
68
C
336 351Right-handed alpha
Helix 69
69
C
360 367Right-handed alpha
Helix 70
70
C
368 371Right-handed 310
Helix 71
71
C
372 389Right-handed alpha
Helix 72
72
C
391 400Right-handed alpha
Helix 73
73
C
403 416Right-handed alpha
Helix 74
74
C
422 439Right-handed alpha
Helix 75
75
D
35 38Right-handed 310
Helix 76
76
D
39 50Right-handed alpha
Helix 77
77
D
72 87Right-handed alpha
Helix 78
78
D
99 112Right-handed alpha
Helix 79
79
D
141 155Right-handed alpha
Helix 80
80
D
155 169Right-handed alpha
Helix 81
81
D
169 174Right-handed alpha
Helix 82
82
D
179 193Right-handed alpha
Helix 83
83
D
194 201Right-handed alpha
Helix 84
84
D
202 205Right-handed 310
Helix 85
85
D
212 216Right-handed 310
Helix 86
86
D
232 235Right-handed 310
Helix 87
87
D
236 244Right-handed alpha
Helix 88
88
D
258 263Right-handed alpha
Helix 89
89
D
263 282Right-handed alpha
Helix 90
90
D
283 296Right-handed alpha
Helix 91
91
D
301 317Right-handed alpha
Helix 92
92
D
321 331Right-handed alpha
Helix 93
93
D
336 351Right-handed alpha
Helix 94
94
D
360 367Right-handed alpha
Helix 95
95
D
368 371Right-handed 310
Helix 96
96
D
372 389Right-handed alpha
Helix 97
97
D
391 400Right-handed alpha
Helix 98
98
D
403 416Right-handed alpha
Helix 99
99
D
422 439Right-handed alpha
Helix 100
100
E
35 38Right-handed 310
Helix 101
101
E
39 50Right-handed alpha
Helix 102
102
E
72 87Right-handed alpha
Helix 103
103
E
99 112Right-handed alpha
Helix 104
104
E
141 155Right-handed alpha
Helix 105
105
E
155 169Right-handed alpha
Helix 106
106
E
169 174Right-handed alpha
Helix 107
107
E
179 193Right-handed alpha
Helix 108
108
E
194 201Right-handed alpha
Helix 109
109
E
202 205Right-handed 310
Helix 110
110
E
212 216Right-handed 310
Helix 111
111
E
232 235Right-handed 310
Helix 112
112
E
236 244Right-handed alpha
Helix 113
113
E
258 263Right-handed alpha
Helix 114
114
E
263 282Right-handed alpha
Helix 115
115
E
283 296Right-handed alpha
Helix 116
116
E
301 317Right-handed alpha
Helix 117
117
E
321 331Right-handed alpha
Helix 118
118
E
336 351Right-handed alpha
Helix 119
119
E
360 367Right-handed alpha
Helix 120
120
E
368 371Right-handed 310
Helix 121
121
E
372 389Right-handed alpha
Helix 122
122
E
391 400Right-handed alpha
Helix 123
123
E
403 416Right-handed alpha
Helix 124
124
E
422 439Right-handed alpha
Helix 125
125
F
35 38Right-handed 310
Helix 126
126
F
39 50Right-handed alpha
Helix 127
127
F
72 87Right-handed alpha
Helix 128
128
F
99 112Right-handed alpha
Helix 129
129
F
141 155Right-handed alpha
Helix 130
130
F
155 169Right-handed alpha
Helix 131
131
F
169 174Right-handed alpha
Helix 132
132
F
179 193Right-handed alpha
Helix 133
133
F
194 201Right-handed alpha
Helix 134
134
F
202 205Right-handed 310
Helix 135
135
F
212 216Right-handed 310
Helix 136
136
F
232 235Right-handed 310
Helix 137
137
F
236 244Right-handed alpha
Helix 138
138
F
258 263Right-handed alpha
Helix 139
139
F
263 280Right-handed alpha
Helix 140
140
F
283 296Right-handed alpha
Helix 141
141
F
301 317Right-handed alpha
Helix 142
142
F
321 331Right-handed alpha
Helix 143
143
F
336 351Right-handed alpha
Helix 144
144
F
360 367Right-handed alpha
Helix 145
145
F
368 371Right-handed 310
Helix 146
146
F
372 389Right-handed alpha
Helix 147
147
F
391 400Right-handed alpha
Helix 148
148
F
403 416Right-handed alpha
Helix 149
149
F
422 439Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 4QF0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 8first strand
Strand 2
A
11 20anti-parallel
Strand 3
A
51 56anti-parallel
Strand 4
A
24 29parallel
Strand 5
A
92 97parallel
Strand 6
A
116 122parallel
Strand 7
A
220 225parallel
Strand 8
A
248 252parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 8first strand
Strand 2
B
11 20anti-parallel
Strand 3
B
51 56anti-parallel
Strand 4
B
24 29parallel
Strand 5
B
92 97parallel
Strand 6
B
116 122parallel
Strand 7
B
220 225parallel
Strand 8
B
248 252parallel
Back to list of sheets
Back to top of page

There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 8first strand
Strand 2
C
11 20anti-parallel
Strand 3
C
51 56anti-parallel
Strand 4
C
24 29parallel
Strand 5
C
92 97parallel
Strand 6
C
116 122parallel
Strand 7
C
220 225parallel
Strand 8
C
248 252parallel
Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 8first strand
Strand 2
D
11 20anti-parallel
Strand 3
D
51 56anti-parallel
Strand 4
D
24 29parallel
Strand 5
D
92 97parallel
Strand 6
D
116 122parallel
Strand 7
D
220 225parallel
Strand 8
D
248 252parallel
Back to list of sheets
Back to top of page

There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
2 8first strand
Strand 2
E
11 20anti-parallel
Strand 3
E
51 56anti-parallel
Strand 4
E
24 29parallel
Strand 5
E
92 97parallel
Strand 6
E
116 122parallel
Strand 7
E
220 225parallel
Strand 8
E
248 252parallel
Back to list of sheets
Back to top of page

There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
2 8first strand
Strand 2
F
11 20anti-parallel
Strand 3
F
51 56anti-parallel
Strand 4
F
24 29parallel
Strand 5
F
92 97parallel
Strand 6
F
116 122parallel
Strand 7
F
220 225parallel
Strand 8
F
248 252parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il