Analysis of interatomic Contacts of Structural Units in PDB entry:
4QII

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4QII entry

There are 5 chains in PDB entry 4QII (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 15	PHE 314
B	ALA 14	PHE 314
C	ALA 14	PHE 314
D	SER 16	PHE 314
E	ASP 17	LYS 95

There are192 helices in PDB entry 4QII. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	21	23	Right-handed 310
Helix 2	2	A	54	58	Right-handed 310
Helix 3	3	A	62	78	Right-handed alpha
Helix 4	4	A	106	108	Right-handed 310
Helix 5	5	A	122	126	Right-handed 310
Helix 6	6	A	135	146	Right-handed alpha
Helix 7	7	A	160	169	Right-handed alpha
Helix 8	8	A	184	189	Right-handed 310
Helix 9	9	A	197	205	Right-handed alpha
Helix 10	10	A	205	216	Right-handed alpha
Helix 11	11	A	220	228	Right-handed alpha
Helix 12	12	A	235	237	Right-handed 310
Helix 13	13	A	238	252	Right-handed alpha
Helix 14	14	A	254	267	Right-handed alpha
Helix 15	15	A	270	288	Right-handed alpha
Helix 16	16	A	289	301	Right-handed alpha
Helix 17	17	B	21	23	Right-handed 310
Helix 18	18	B	54	58	Right-handed 310
Helix 19	19	B	62	78	Right-handed alpha
Helix 20	20	B	106	108	Right-handed 310
Helix 21	21	B	122	126	Right-handed 310
Helix 22	22	B	135	146	Right-handed alpha
Helix 23	23	B	160	169	Right-handed alpha
Helix 24	24	B	184	189	Right-handed 310
Helix 25	25	B	197	205	Right-handed alpha
Helix 26	26	B	205	216	Right-handed alpha
Helix 27	27	B	220	228	Right-handed alpha
Helix 28	28	B	235	237	Right-handed 310
Helix 29	29	B	238	252	Right-handed alpha
Helix 30	30	B	254	268	Right-handed alpha
Helix 31	31	B	270	288	Right-handed alpha
Helix 32	32	B	289	301	Right-handed alpha
Helix 33	33	C	21	23	Right-handed 310
Helix 34	34	C	54	58	Right-handed 310
Helix 35	35	C	62	78	Right-handed alpha
Helix 36	36	C	106	108	Right-handed 310
Helix 37	37	C	122	126	Right-handed 310
Helix 38	38	C	135	146	Right-handed alpha
Helix 39	39	C	160	169	Right-handed alpha
Helix 40	40	C	184	189	Right-handed 310
Helix 41	41	C	197	205	Right-handed alpha
Helix 42	42	C	205	216	Right-handed alpha
Helix 43	43	C	220	228	Right-handed alpha
Helix 44	44	C	235	237	Right-handed 310
Helix 45	45	C	238	252	Right-handed alpha
Helix 46	46	C	254	267	Right-handed alpha
Helix 47	47	C	270	288	Right-handed alpha
Helix 48	48	C	289	301	Right-handed alpha
Helix 49	49	D	21	23	Right-handed 310
Helix 50	50	D	54	58	Right-handed 310
Helix 51	51	D	62	78	Right-handed alpha
Helix 52	52	D	106	108	Right-handed 310
Helix 53	53	D	122	126	Right-handed 310
Helix 54	54	D	135	146	Right-handed alpha
Helix 55	55	D	160	169	Right-handed alpha
Helix 56	56	D	184	189	Right-handed 310
Helix 57	57	D	197	205	Right-handed alpha
Helix 58	58	D	205	216	Right-handed alpha
Helix 59	59	D	221	228	Right-handed alpha
Helix 60	60	D	235	237	Right-handed 310
Helix 61	61	D	238	252	Right-handed alpha
Helix 62	62	D	254	267	Right-handed alpha
Helix 63	63	D	270	288	Right-handed alpha
Helix 64	64	D	289	301	Right-handed alpha
Helix 65	65	E	21	23	Right-handed 310
Helix 66	66	E	54	58	Right-handed 310
Helix 67	67	E	62	78	Right-handed alpha
Helix 68	68	E	106	108	Right-handed 310
Helix 69	69	E	122	126	Right-handed 310
Helix 70	70	E	135	146	Right-handed alpha
Helix 71	71	E	160	169	Right-handed alpha
Helix 72	72	E	184	189	Right-handed 310
Helix 73	73	E	197	205	Right-handed alpha
Helix 74	74	E	205	216	Right-handed alpha
Helix 75	75	E	220	228	Right-handed alpha
Helix 76	76	E	235	237	Right-handed 310
Helix 77	77	E	238	252	Right-handed alpha
Helix 78	78	E	254	267	Right-handed alpha
Helix 79	79	E	270	288	Right-handed alpha
Helix 80	80	E	289	301	Right-handed alpha
Helix 81	81	F	21	23	Right-handed 310
Helix 82	82	F	54	58	Right-handed 310
Helix 83	83	F	62	78	Right-handed alpha
Helix 84	84	F	106	108	Right-handed 310
Helix 85	85	F	122	126	Right-handed 310
Helix 86	86	F	135	146	Right-handed alpha
Helix 87	87	F	160	169	Right-handed alpha
Helix 88	88	F	184	189	Right-handed 310
Helix 89	89	F	197	205	Right-handed alpha
Helix 90	90	F	205	216	Right-handed alpha
Helix 91	91	F	221	228	Right-handed alpha
Helix 92	92	F	235	237	Right-handed 310
Helix 93	93	F	238	252	Right-handed alpha
Helix 94	94	F	254	267	Right-handed alpha
Helix 95	95	F	270	288	Right-handed alpha
Helix 96	96	F	289	301	Right-handed alpha
Helix 97	97	G	21	23	Right-handed 310
Helix 98	98	G	54	58	Right-handed 310
Helix 99	99	G	62	78	Right-handed alpha
Helix 100	100	G	106	108	Right-handed 310
Helix 101	101	G	122	126	Right-handed 310
Helix 102	102	G	135	146	Right-handed alpha
Helix 103	103	G	160	169	Right-handed alpha
Helix 104	104	G	184	189	Right-handed 310
Helix 105	105	G	197	205	Right-handed alpha
Helix 106	106	G	205	216	Right-handed alpha
Helix 107	107	G	220	228	Right-handed alpha
Helix 108	108	G	235	237	Right-handed 310
Helix 109	109	G	238	252	Right-handed alpha
Helix 110	110	G	254	267	Right-handed alpha
Helix 111	111	G	270	288	Right-handed alpha
Helix 112	112	G	289	301	Right-handed alpha
Helix 113	113	H	21	23	Right-handed 310
Helix 114	114	H	54	58	Right-handed 310
Helix 115	115	H	62	78	Right-handed alpha
Helix 116	116	H	106	108	Right-handed 310
Helix 117	117	H	122	126	Right-handed 310
Helix 118	118	H	135	146	Right-handed alpha
Helix 119	119	H	160	169	Right-handed alpha
Helix 120	120	H	184	189	Right-handed 310
Helix 121	121	H	197	205	Right-handed alpha
Helix 122	122	H	205	216	Right-handed alpha
Helix 123	123	H	220	228	Right-handed alpha
Helix 124	124	H	235	237	Right-handed 310
Helix 125	125	H	238	252	Right-handed alpha
Helix 126	126	H	254	267	Right-handed alpha
Helix 127	127	H	270	288	Right-handed alpha
Helix 128	128	H	289	302	Right-handed alpha
Helix 129	129	I	21	23	Right-handed 310
Helix 130	130	I	54	58	Right-handed 310
Helix 131	131	I	62	78	Right-handed alpha
Helix 132	132	I	106	108	Right-handed 310
Helix 133	133	I	122	126	Right-handed 310
Helix 134	134	I	135	146	Right-handed alpha
Helix 135	135	I	160	169	Right-handed alpha
Helix 136	136	I	184	189	Right-handed 310
Helix 137	137	I	197	205	Right-handed alpha
Helix 138	138	I	205	216	Right-handed alpha
Helix 139	139	I	220	228	Right-handed alpha
Helix 140	140	I	235	237	Right-handed 310
Helix 141	141	I	238	252	Right-handed alpha
Helix 142	142	I	254	267	Right-handed alpha
Helix 143	143	I	270	288	Right-handed alpha
Helix 144	144	I	289	301	Right-handed alpha
Helix 145	145	J	21	23	Right-handed 310
Helix 146	146	J	54	58	Right-handed 310
Helix 147	147	J	62	78	Right-handed alpha
Helix 148	148	J	106	108	Right-handed 310
Helix 149	149	J	122	126	Right-handed 310
Helix 150	150	J	135	146	Right-handed alpha
Helix 151	151	J	160	169	Right-handed alpha
Helix 152	152	J	184	189	Right-handed 310
Helix 153	153	J	197	205	Right-handed alpha
Helix 154	154	J	205	216	Right-handed alpha
Helix 155	155	J	221	228	Right-handed alpha
Helix 156	156	J	235	237	Right-handed 310
Helix 157	157	J	238	252	Right-handed alpha
Helix 158	158	J	254	267	Right-handed alpha
Helix 159	159	J	270	288	Right-handed alpha
Helix 160	160	J	289	302	Right-handed alpha
Helix 161	161	K	21	23	Right-handed 310
Helix 162	162	K	54	58	Right-handed 310
Helix 163	163	K	62	78	Right-handed alpha
Helix 164	164	K	106	108	Right-handed 310
Helix 165	165	K	122	126	Right-handed 310
Helix 166	166	K	135	146	Right-handed alpha
Helix 167	167	K	160	169	Right-handed alpha
Helix 168	168	K	184	189	Right-handed 310
Helix 169	169	K	197	205	Right-handed alpha
Helix 170	170	K	205	216	Right-handed alpha
Helix 171	171	K	221	228	Right-handed alpha
Helix 172	172	K	235	237	Right-handed 310
Helix 173	173	K	238	252	Right-handed alpha
Helix 174	174	K	254	267	Right-handed alpha
Helix 175	175	K	270	288	Right-handed alpha
Helix 176	176	K	289	301	Right-handed alpha
Helix 177	177	L	21	23	Right-handed 310
Helix 178	178	L	54	58	Right-handed 310
Helix 179	179	L	62	78	Right-handed alpha
Helix 180	180	L	106	108	Right-handed 310
Helix 181	181	L	122	126	Right-handed 310
Helix 182	182	L	135	146	Right-handed alpha
Helix 183	183	L	160	169	Right-handed alpha
Helix 184	184	L	184	189	Right-handed 310
Helix 185	185	L	197	205	Right-handed alpha
Helix 186	186	L	205	216	Right-handed alpha
Helix 187	187	L	221	228	Right-handed alpha
Helix 188	188	L	235	237	Right-handed 310
Helix 189	189	L	238	252	Right-handed alpha
Helix 190	190	L	254	267	Right-handed alpha
Helix 191	191	L	270	288	Right-handed alpha
Helix 192	192	L	289	301	Right-handed alpha

There are 36 sheets in PDB entry 4QII. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	27	first strand
Strand 2	A	37	42	anti-parallel
Strand 3	A	47	52	anti-parallel
Strand 4	A	84	89	parallel
Strand 5	A	149	154	parallel
Strand 6	A	171	175	parallel
Strand 7	A	232	234	parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	102	first strand
Strand 2	A	157	159	parallel
Strand 3	A	180	182	parallel
Strand 4	A	218	219	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	111	first strand
Strand 2	A	114	115	anti-parallel

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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	27	first strand
Strand 2	B	37	42	anti-parallel
Strand 3	B	47	52	anti-parallel
Strand 4	B	84	89	parallel
Strand 5	B	149	154	parallel
Strand 6	B	171	175	parallel
Strand 7	B	232	234	parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	102	first strand
Strand 2	B	157	159	parallel
Strand 3	B	180	182	parallel
Strand 4	B	218	219	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	111	first strand
Strand 2	B	114	115	anti-parallel

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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	27	first strand
Strand 2	C	37	42	anti-parallel
Strand 3	C	47	52	anti-parallel
Strand 4	C	84	89	parallel
Strand 5	C	149	154	parallel
Strand 6	C	171	175	parallel
Strand 7	C	232	234	parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	C	157	159	parallel
Strand 3	C	180	182	parallel
Strand 4	C	218	219	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	111	first strand
Strand 2	C	114	115	anti-parallel

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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	25	26	first strand
Strand 2	D	37	42	anti-parallel
Strand 3	D	47	52	anti-parallel
Strand 4	D	84	89	parallel
Strand 5	D	149	154	parallel
Strand 6	D	171	175	parallel
Strand 7	D	232	234	parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	102	first strand
Strand 2	D	157	159	parallel
Strand 3	D	180	182	parallel
Strand 4	D	218	220	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	110	111	first strand
Strand 2	D	114	115	anti-parallel

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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	25	27	first strand
Strand 2	E	37	42	anti-parallel
Strand 3	E	47	52	anti-parallel
Strand 4	E	84	89	parallel
Strand 5	E	149	154	parallel
Strand 6	E	171	175	parallel
Strand 7	E	232	234	parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	100	102	first strand
Strand 2	E	157	159	parallel
Strand 3	E	180	182	parallel
Strand 4	E	218	219	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	110	111	first strand
Strand 2	E	114	115	anti-parallel

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There are 7 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	25	27	first strand
Strand 2	F	37	42	anti-parallel
Strand 3	F	47	52	anti-parallel
Strand 4	F	84	89	parallel
Strand 5	F	149	154	parallel
Strand 6	F	171	175	parallel
Strand 7	F	232	234	parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	100	102	first strand
Strand 2	F	157	159	parallel
Strand 3	F	180	182	parallel
Strand 4	F	218	220	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	110	111	first strand
Strand 2	F	114	115	anti-parallel

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There are 7 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	25	27	first strand
Strand 2	G	37	42	anti-parallel
Strand 3	G	47	52	anti-parallel
Strand 4	G	84	89	parallel
Strand 5	G	149	154	parallel
Strand 6	G	171	175	parallel
Strand 7	G	232	234	parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	100	102	first strand
Strand 2	G	157	159	parallel
Strand 3	G	180	182	parallel
Strand 4	G	218	219	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	110	111	first strand
Strand 2	G	114	115	anti-parallel

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There are 7 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	25	27	first strand
Strand 2	H	37	42	anti-parallel
Strand 3	H	47	52	anti-parallel
Strand 4	H	84	89	parallel
Strand 5	H	149	154	parallel
Strand 6	H	171	175	parallel
Strand 7	H	232	234	parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	100	102	first strand
Strand 2	H	157	159	parallel
Strand 3	H	180	182	parallel
Strand 4	H	218	219	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	110	111	first strand
Strand 2	H	114	115	anti-parallel

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There are 7 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	25	27	first strand
Strand 2	I	37	42	anti-parallel
Strand 3	I	47	52	anti-parallel
Strand 4	I	84	89	parallel
Strand 5	I	149	154	parallel
Strand 6	I	171	175	parallel
Strand 7	I	232	234	parallel

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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	100	102	first strand
Strand 2	I	157	159	parallel
Strand 3	I	180	182	parallel
Strand 4	I	218	219	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	110	111	first strand
Strand 2	I	114	115	anti-parallel

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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	25	27	first strand
Strand 2	J	37	42	anti-parallel
Strand 3	J	47	52	anti-parallel
Strand 4	J	84	89	parallel
Strand 5	J	149	154	parallel
Strand 6	J	171	175	parallel
Strand 7	J	232	234	parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	100	102	first strand
Strand 2	J	157	159	parallel
Strand 3	J	180	182	parallel
Strand 4	J	218	220	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	110	111	first strand
Strand 2	J	114	115	anti-parallel

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There are 7 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	25	27	first strand
Strand 2	K	37	42	anti-parallel
Strand 3	K	47	52	anti-parallel
Strand 4	K	84	89	parallel
Strand 5	K	149	154	parallel
Strand 6	K	171	175	parallel
Strand 7	K	232	234	parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	100	102	first strand
Strand 2	K	157	159	parallel
Strand 3	K	180	182	parallel
Strand 4	K	218	220	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	110	111	first strand
Strand 2	K	114	115	anti-parallel

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There are 7 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	25	27	first strand
Strand 2	L	37	42	anti-parallel
Strand 3	L	47	52	anti-parallel
Strand 4	L	84	89	parallel
Strand 5	L	149	154	parallel
Strand 6	L	171	175	parallel
Strand 7	L	232	234	parallel

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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	100	102	first strand
Strand 2	L	157	159	parallel
Strand 3	L	180	182	parallel
Strand 4	L	218	220	anti-parallel

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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	110	111	first strand
Strand 2	L	114	115	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4QII

Analysis of interatomic Contacts of Structural Units in PDB entry:
4QII