Analysis of interatomic Contacts of Structural Units in PDB entry:
4QJB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4QJB entry

There are 2 chains in PDB entry 4QJB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 288
B
 GLU 20CYS 286
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 4QJB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 17Right-handed 310
Helix 2
2
A
40 54Right-handed alpha
Helix 3
3
A
64 72Right-handed alpha
Helix 4
4
A
72 78Right-handed alpha
Helix 5
5
A
89 91Right-handed 310
Helix 6
6
A
108 122Right-handed alpha
Helix 7
7
A
124 126Right-handed 310
Helix 8
8
A
142 153Right-handed alpha
Helix 9
9
A
160 167Right-handed 310
Helix 10
10
A
177 179Right-handed 310
Helix 11
11
A
180 192Right-handed alpha
Helix 12
12
A
214 226Right-handed alpha
Helix 13
13
A
229 231Right-handed 310
Helix 14
14
A
239 241Right-handed 310
Helix 15
15
A
242 249Right-handed alpha
Helix 16
16
A
259 266Right-handed alpha
Helix 17
17
A
272 275Right-handed 310
Helix 18
18
A
276 287Right-handed alpha
Helix 19
19
B
40 53Right-handed alpha
Helix 20
20
B
64 78Right-handed alpha
Helix 21
21
B
89 91Right-handed 310
Helix 22
22
B
108 122Right-handed alpha
Helix 23
23
B
124 126Right-handed 310
Helix 24
24
B
142 152Right-handed alpha
Helix 25
25
B
160 167Right-handed 310
Helix 26
26
B
177 179Right-handed 310
Helix 27
27
B
180 193Right-handed alpha
Helix 28
28
B
214 226Right-handed alpha
Helix 29
29
B
229 231Right-handed 310
Helix 30
30
B
239 241Right-handed 310
Helix 31
31
B
242 249Right-handed alpha
Helix 32
32
B
259 265Right-handed alpha
Helix 33
33
B
272 275Right-handed 310
Helix 34
34
B
276 285Right-handed alpha
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There are 6 sheets in PDB entry 4QJB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 59first strand
Strand 2
A
23 26parallel
Strand 3
A
233 237parallel
Strand 4
A
251 255parallel
Strand 5
A
268 270parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 88first strand
Strand 2
A
93 95anti-parallel
Strand 3
A
101 104anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 158first strand
Strand 2
A
136 138parallel
Strand 3
A
128 131anti-parallel
Strand 4
A
171 175anti-parallel
Strand 5
A
205 210anti-parallel
Strand 6
A
196 200anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 59first strand
Strand 2
B
23 26parallel
Strand 3
B
233 237parallel
Strand 4
B
251 255parallel
Strand 5
B
268 270parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 88first strand
Strand 2
B
93 95anti-parallel
Strand 3
B
101 104anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 158first strand
Strand 2
B
136 138parallel
Strand 3
B
128 131anti-parallel
Strand 4
B
171 175anti-parallel
Strand 5
B
205 209anti-parallel
Strand 6
B
197 199anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il