Analysis of interatomic Contacts of Structural Units in PDB entry:
4QJE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4QJE entry

There are 4 chains in PDB entry 4QJE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 4	VAL 288
A	SER 290	LYS 496
B	LEU 4	LYS 496
C	MET 1	SER 221

There are 77 helices in PDB entry 4QJE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	44	62	Right-handed alpha
Helix 2	2	A	68	86	Right-handed alpha
Helix 3	3	A	86	99	Right-handed alpha
Helix 4	4	A	101	123	Right-handed alpha
Helix 5	5	A	158	174	Right-handed alpha
Helix 6	6	A	186	200	Right-handed alpha
Helix 7	7	A	212	223	Right-handed alpha
Helix 8	8	A	234	246	Right-handed alpha
Helix 9	9	A	247	249	Right-handed 310
Helix 10	10	A	269	283	Right-handed alpha
Helix 11	11	A	284	287	Right-handed 310
Helix 12	12	A	299	314	Right-handed alpha
Helix 13	13	A	333	350	Right-handed alpha
Helix 14	14	A	363	367	Right-handed 310
Helix 15	15	A	384	389	Right-handed alpha
Helix 16	16	A	403	412	Right-handed alpha
Helix 17	17	A	426	437	Right-handed alpha
Helix 18	18	A	459	461	Right-handed 310
Helix 19	19	A	468	475	Right-handed alpha
Helix 20	20	B	44	62	Right-handed alpha
Helix 21	21	B	68	86	Right-handed alpha
Helix 22	22	B	86	99	Right-handed alpha
Helix 23	23	B	101	123	Right-handed alpha
Helix 24	24	B	158	174	Right-handed alpha
Helix 25	25	B	186	200	Right-handed alpha
Helix 26	26	B	215	223	Right-handed alpha
Helix 27	27	B	234	246	Right-handed alpha
Helix 28	28	B	247	249	Right-handed 310
Helix 29	29	B	269	283	Right-handed alpha
Helix 30	30	B	284	287	Right-handed 310
Helix 31	31	B	299	314	Right-handed alpha
Helix 32	32	B	333	350	Right-handed alpha
Helix 33	33	B	363	367	Right-handed 310
Helix 34	34	B	384	389	Right-handed alpha
Helix 35	35	B	403	413	Right-handed alpha
Helix 36	36	B	426	437	Right-handed alpha
Helix 37	37	B	459	461	Right-handed 310
Helix 38	38	B	468	475	Right-handed alpha
Helix 39	39	C	2	6	Right-handed 310
Helix 40	40	C	44	62	Right-handed alpha
Helix 41	41	C	68	86	Right-handed alpha
Helix 42	42	C	86	99	Right-handed alpha
Helix 43	43	C	101	123	Right-handed alpha
Helix 44	44	C	158	174	Right-handed alpha
Helix 45	45	C	186	200	Right-handed alpha
Helix 46	46	C	215	223	Right-handed alpha
Helix 47	47	C	234	247	Right-handed alpha
Helix 48	48	C	269	283	Right-handed alpha
Helix 49	49	C	284	287	Right-handed 310
Helix 50	50	C	299	314	Right-handed alpha
Helix 51	51	C	333	350	Right-handed alpha
Helix 52	52	C	363	367	Right-handed 310
Helix 53	53	C	384	389	Right-handed alpha
Helix 54	54	C	403	413	Right-handed alpha
Helix 55	55	C	426	437	Right-handed alpha
Helix 56	56	C	459	461	Right-handed 310
Helix 57	57	C	468	475	Right-handed alpha
Helix 58	58	D	2	6	Right-handed 310
Helix 59	59	D	44	62	Right-handed alpha
Helix 60	60	D	68	86	Right-handed alpha
Helix 61	61	D	86	99	Right-handed alpha
Helix 62	62	D	101	123	Right-handed alpha
Helix 63	63	D	158	174	Right-handed alpha
Helix 64	64	D	186	200	Right-handed alpha
Helix 65	65	D	215	223	Right-handed alpha
Helix 66	66	D	234	246	Right-handed alpha
Helix 67	67	D	247	249	Right-handed 310
Helix 68	68	D	269	283	Right-handed alpha
Helix 69	69	D	284	287	Right-handed 310
Helix 70	70	D	299	314	Right-handed alpha
Helix 71	71	D	333	350	Right-handed alpha
Helix 72	72	D	363	367	Right-handed 310
Helix 73	73	D	384	389	Right-handed alpha
Helix 74	74	D	403	413	Right-handed alpha
Helix 75	75	D	426	437	Right-handed alpha
Helix 76	76	D	459	461	Right-handed 310
Helix 77	77	D	468	475	Right-handed alpha

There are 16 sheets in PDB entry 4QJE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	13	first strand
Strand 2	A	16	18	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	29	first strand
Strand 2	A	36	41	anti-parallel

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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	131	first strand
Strand 2	A	138	146	anti-parallel
Strand 3	A	477	485	anti-parallel
Strand 4	B	441	444	parallel
Strand 5	B	419	423	parallel
Strand 6	B	261	264	parallel
Strand 7	B	294	298	parallel
Strand 8	B	395	401	parallel
Strand 9	B	375	378	parallel
Strand 10	B	353	356	anti-parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	208	first strand
Strand 2	A	176	180	parallel
Strand 3	A	149	153	parallel
Strand 4	A	228	232	parallel
Strand 5	A	251	255	parallel
Strand 6	A	463	464	anti-parallel

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There are 10 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	356	first strand
Strand 2	A	375	378	anti-parallel
Strand 3	A	395	401	parallel
Strand 4	A	294	298	parallel
Strand 5	A	261	264	parallel
Strand 6	A	419	423	parallel
Strand 7	A	441	444	parallel
Strand 8	B	477	485	parallel
Strand 9	B	138	146	anti-parallel
Strand 10	B	128	131	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	13	first strand
Strand 2	B	16	18	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	29	first strand
Strand 2	B	36	41	anti-parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	208	first strand
Strand 2	B	176	180	parallel
Strand 3	B	149	153	parallel
Strand 4	B	228	232	parallel
Strand 5	B	251	255	parallel
Strand 6	B	463	464	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	13	first strand
Strand 2	C	16	18	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	29	first strand
Strand 2	C	36	41	anti-parallel

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There are 10 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	131	first strand
Strand 2	C	138	146	anti-parallel
Strand 3	C	477	485	anti-parallel
Strand 4	D	441	444	parallel
Strand 5	D	419	423	parallel
Strand 6	D	261	264	parallel
Strand 7	D	294	298	parallel
Strand 8	D	395	401	parallel
Strand 9	D	375	378	parallel
Strand 10	D	353	356	anti-parallel

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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	206	208	first strand
Strand 2	C	176	180	parallel
Strand 3	C	149	153	parallel
Strand 4	C	228	232	parallel
Strand 5	C	251	255	parallel
Strand 6	C	463	464	anti-parallel

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There are 10 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	353	356	first strand
Strand 2	C	375	378	anti-parallel
Strand 3	C	395	401	parallel
Strand 4	C	294	298	parallel
Strand 5	C	261	264	parallel
Strand 6	C	419	423	parallel
Strand 7	C	441	444	parallel
Strand 8	D	477	485	parallel
Strand 9	D	138	146	anti-parallel
Strand 10	D	128	131	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	13	first strand
Strand 2	D	16	18	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	25	29	first strand
Strand 2	D	36	41	anti-parallel

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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	206	208	first strand
Strand 2	D	176	180	parallel
Strand 3	D	149	153	parallel
Strand 4	D	228	232	parallel
Strand 5	D	251	255	parallel
Strand 6	D	463	464	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4QJE

Analysis of interatomic Contacts of Structural Units in PDB entry:
4QJE