Analysis of interatomic Contacts of Structural Units in PDB entry:
4QJY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4QJY entry

There are 2 chains in PDB entry 4QJY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 6LYS 642
B
 VAL 6LYS 642
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 4QJY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 27Right-handed alpha
Helix 2
2
A
27 37Right-handed alpha
Helix 3
3
A
47 56Right-handed alpha
Helix 4
4
A
69 87Right-handed alpha
Helix 5
5
A
89 107Right-handed alpha
Helix 6
6
A
115 120Right-handed alpha
Helix 7
7
A
133 153Right-handed alpha
Helix 8
8
A
155 172Right-handed alpha
Helix 9
9
A
187 200Right-handed alpha
Helix 10
10
A
201 215Right-handed alpha
Helix 11
11
A
220 229Right-handed alpha
Helix 12
12
A
239 245Right-handed 310
Helix 13
13
A
249 253Right-handed 310
Helix 14
14
A
260 278Right-handed alpha
Helix 15
15
A
279 297Right-handed alpha
Helix 16
16
A
327 345Right-handed alpha
Helix 17
17
A
347 360Right-handed alpha
Helix 18
18
A
362 366Right-handed 310
Helix 19
19
A
382 392Right-handed 310
Helix 20
20
A
407 417Right-handed alpha
Helix 21
21
A
418 422Right-handed alpha
Helix 22
22
A
499 501Right-handed 310
Helix 23
23
A
537 541Right-handed 310
Helix 24
24
A
557 561Right-handed alpha
Helix 25
25
A
599 603Right-handed 310
Helix 26
26
A
625 627Right-handed 310
Helix 27
27
B
15 27Right-handed alpha
Helix 28
28
B
27 37Right-handed alpha
Helix 29
29
B
47 56Right-handed alpha
Helix 30
30
B
69 87Right-handed alpha
Helix 31
31
B
89 107Right-handed alpha
Helix 32
32
B
114 120Right-handed alpha
Helix 33
33
B
133 153Right-handed alpha
Helix 34
34
B
155 172Right-handed alpha
Helix 35
35
B
187 200Right-handed alpha
Helix 36
36
B
201 215Right-handed alpha
Helix 37
37
B
220 229Right-handed alpha
Helix 38
38
B
239 245Right-handed 310
Helix 39
39
B
249 253Right-handed 310
Helix 40
40
B
259 278Right-handed alpha
Helix 41
41
B
279 297Right-handed alpha
Helix 42
42
B
308 312Right-handed 310
Helix 43
43
B
327 345Right-handed alpha
Helix 44
44
B
347 360Right-handed alpha
Helix 45
45
B
362 366Right-handed 310
Helix 46
46
B
382 392Right-handed 310
Helix 47
47
B
407 417Right-handed alpha
Helix 48
48
B
418 421Right-handed 310
Helix 49
49
B
499 501Right-handed 310
Helix 50
50
B
537 541Right-handed 310
Helix 51
51
B
557 561Right-handed alpha
Helix 52
52
B
563 565Right-handed 310
Helix 53
53
B
625 627Right-handed 310
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There are 12 sheets in PDB entry 4QJY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 12first strand
Strand 2
A
438 444anti-parallel
Strand 3
A
447 455anti-parallel
Strand 4
A
462 469anti-parallel
Strand 5
A
518 523anti-parallel
Strand 6
A
489 492anti-parallel
Strand 7
A
495 496anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 259first strand
Strand 2
A
312 313anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 381first strand
Strand 2
A
635 636anti-parallel
Strand 3
A
551 556anti-parallel
Strand 4
A
543 548anti-parallel
Strand 5
A
614 623first strand
Strand 6
A
587 597anti-parallel
Strand 7
A
576 580anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
528 531first strand
Strand 2
A
543 548anti-parallel
Strand 3
A
551 556anti-parallel
Strand 4
A
639 640first strand
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 425first strand
Strand 2
A
429 432anti-parallel
Strand 3
A
473 480parallel
Strand 4
A
507 514anti-parallel
Strand 5
A
503 504anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 12first strand
Strand 2
B
438 444anti-parallel
Strand 3
B
447 455anti-parallel
Strand 4
B
462 469anti-parallel
Strand 5
B
518 523anti-parallel
Strand 6
B
489 492anti-parallel
Strand 7
B
495 496anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
380 381first strand
Strand 2
B
635 636anti-parallel
Strand 3
B
551 556anti-parallel
Strand 4
B
543 548anti-parallel
Strand 5
B
528 531anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
528 531first strand
Strand 2
B
543 548anti-parallel
Strand 3
B
639 640anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
639 640first strand
Strand 2
B
543 548anti-parallel
Strand 3
B
551 556anti-parallel
Strand 4
B
614 623anti-parallel
Strand 5
B
587 597anti-parallel
Strand 6
B
576 580anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
576 580first strand
Strand 2
B
587 597anti-parallel
Strand 3
B
567 568anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
567 568first strand
Strand 2
B
587 597anti-parallel
Strand 3
B
614 623anti-parallel
Strand 4
B
551 556anti-parallel
Strand 5
B
635 636anti-parallel
Strand 6
B
380 381anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
423 425first strand
Strand 2
B
429 432anti-parallel
Strand 3
B
473 480parallel
Strand 4
B
507 514anti-parallel
Strand 5
B
503 504anti-parallel
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