Analysis of interatomic Contacts of Structural Units in PDB entry:
4QQ8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4QQ8 entry

There are 3 chains in PDB entry 4QQ8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	GLY 564
B	ALA 2	GLY 564
C	ALA 2	PHE 227

There are132 helices in PDB entry 4QQ8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	6	17	Right-handed alpha
Helix 2	2	A	27	29	Right-handed 310
Helix 3	3	A	30	41	Right-handed alpha
Helix 4	4	A	49	65	Right-handed alpha
Helix 5	5	A	75	80	Right-handed alpha
Helix 6	6	A	81	92	Right-handed alpha
Helix 7	7	A	103	107	Right-handed 310
Helix 8	8	A	117	123	Right-handed alpha
Helix 9	9	A	124	126	Right-handed 310
Helix 10	10	A	134	136	Right-handed 310
Helix 11	11	A	137	151	Right-handed alpha
Helix 12	12	A	163	168	Right-handed alpha
Helix 13	13	A	173	175	Right-handed 310
Helix 14	14	A	190	204	Right-handed alpha
Helix 15	15	A	212	219	Right-handed alpha
Helix 16	16	A	220	232	Right-handed alpha
Helix 17	17	A	241	246	Right-handed 310
Helix 18	18	A	249	251	Right-handed 310
Helix 19	19	A	258	264	Right-handed 310
Helix 20	20	A	281	285	Right-handed 310
Helix 21	21	A	304	308	Right-handed 310
Helix 22	22	A	321	337	Right-handed alpha
Helix 23	23	A	342	364	Right-handed alpha
Helix 24	24	A	371	381	Right-handed alpha
Helix 25	25	A	394	405	Right-handed alpha
Helix 26	26	A	423	438	Right-handed alpha
Helix 27	27	A	448	452	Right-handed alpha
Helix 28	28	A	453	455	Right-handed 310
Helix 29	29	A	456	464	Right-handed alpha
Helix 30	30	A	478	489	Right-handed alpha
Helix 31	31	A	503	511	Right-handed alpha
Helix 32	32	A	520	534	Right-handed alpha
Helix 33	33	A	550	556	Right-handed alpha
Helix 34	34	B	6	17	Right-handed alpha
Helix 35	35	B	27	29	Right-handed 310
Helix 36	36	B	30	40	Right-handed alpha
Helix 37	37	B	49	65	Right-handed alpha
Helix 38	38	B	75	81	Right-handed alpha
Helix 39	39	B	81	92	Right-handed alpha
Helix 40	40	B	103	107	Right-handed 310
Helix 41	41	B	117	123	Right-handed alpha
Helix 42	42	B	124	126	Right-handed 310
Helix 43	43	B	134	136	Right-handed 310
Helix 44	44	B	137	151	Right-handed alpha
Helix 45	45	B	163	168	Right-handed alpha
Helix 46	46	B	173	175	Right-handed 310
Helix 47	47	B	190	204	Right-handed alpha
Helix 48	48	B	212	219	Right-handed alpha
Helix 49	49	B	220	232	Right-handed alpha
Helix 50	50	B	241	246	Right-handed 310
Helix 51	51	B	249	251	Right-handed 310
Helix 52	52	B	258	264	Right-handed 310
Helix 53	53	B	281	285	Right-handed 310
Helix 54	54	B	304	308	Right-handed 310
Helix 55	55	B	321	334	Right-handed alpha
Helix 56	56	B	342	364	Right-handed alpha
Helix 57	57	B	371	381	Right-handed alpha
Helix 58	58	B	394	405	Right-handed alpha
Helix 59	59	B	423	438	Right-handed alpha
Helix 60	60	B	448	452	Right-handed alpha
Helix 61	61	B	453	455	Right-handed 310
Helix 62	62	B	456	464	Right-handed alpha
Helix 63	63	B	478	489	Right-handed alpha
Helix 64	64	B	503	511	Right-handed alpha
Helix 65	65	B	520	534	Right-handed alpha
Helix 66	66	B	550	556	Right-handed alpha
Helix 67	67	C	6	17	Right-handed alpha
Helix 68	68	C	27	29	Right-handed 310
Helix 69	69	C	30	41	Right-handed alpha
Helix 70	70	C	49	65	Right-handed alpha
Helix 71	71	C	75	80	Right-handed alpha
Helix 72	72	C	81	92	Right-handed alpha
Helix 73	73	C	103	107	Right-handed 310
Helix 74	74	C	117	123	Right-handed alpha
Helix 75	75	C	124	126	Right-handed 310
Helix 76	76	C	134	136	Right-handed 310
Helix 77	77	C	137	151	Right-handed alpha
Helix 78	78	C	163	168	Right-handed alpha
Helix 79	79	C	173	175	Right-handed 310
Helix 80	80	C	190	204	Right-handed alpha
Helix 81	81	C	212	219	Right-handed alpha
Helix 82	82	C	220	232	Right-handed alpha
Helix 83	83	C	241	246	Right-handed 310
Helix 84	84	C	249	251	Right-handed 310
Helix 85	85	C	258	264	Right-handed 310
Helix 86	86	C	281	285	Right-handed 310
Helix 87	87	C	304	308	Right-handed 310
Helix 88	88	C	321	336	Right-handed alpha
Helix 89	89	C	342	364	Right-handed alpha
Helix 90	90	C	371	381	Right-handed alpha
Helix 91	91	C	394	405	Right-handed alpha
Helix 92	92	C	423	438	Right-handed alpha
Helix 93	93	C	448	452	Right-handed alpha
Helix 94	94	C	453	455	Right-handed 310
Helix 95	95	C	456	464	Right-handed alpha
Helix 96	96	C	478	489	Right-handed alpha
Helix 97	97	C	503	511	Right-handed alpha
Helix 98	98	C	520	534	Right-handed alpha
Helix 99	99	C	550	556	Right-handed alpha
Helix 100	100	D	6	17	Right-handed alpha
Helix 101	101	D	27	29	Right-handed 310
Helix 102	102	D	30	41	Right-handed alpha
Helix 103	103	D	49	65	Right-handed alpha
Helix 104	104	D	75	80	Right-handed alpha
Helix 105	105	D	81	92	Right-handed alpha
Helix 106	106	D	103	107	Right-handed 310
Helix 107	107	D	117	123	Right-handed alpha
Helix 108	108	D	124	126	Right-handed 310
Helix 109	109	D	134	136	Right-handed 310
Helix 110	110	D	137	151	Right-handed alpha
Helix 111	111	D	163	168	Right-handed alpha
Helix 112	112	D	173	175	Right-handed 310
Helix 113	113	D	190	204	Right-handed alpha
Helix 114	114	D	212	219	Right-handed alpha
Helix 115	115	D	220	232	Right-handed alpha
Helix 116	116	D	241	246	Right-handed 310
Helix 117	117	D	249	251	Right-handed 310
Helix 118	118	D	258	264	Right-handed 310
Helix 119	119	D	281	285	Right-handed 310
Helix 120	120	D	304	308	Right-handed 310
Helix 121	121	D	321	334	Right-handed alpha
Helix 122	122	D	342	364	Right-handed alpha
Helix 123	123	D	371	381	Right-handed alpha
Helix 124	124	D	394	405	Right-handed alpha
Helix 125	125	D	423	438	Right-handed alpha
Helix 126	126	D	448	452	Right-handed alpha
Helix 127	127	D	453	455	Right-handed 310
Helix 128	128	D	456	464	Right-handed alpha
Helix 129	129	D	478	489	Right-handed alpha
Helix 130	130	D	503	511	Right-handed alpha
Helix 131	131	D	520	534	Right-handed alpha
Helix 132	132	D	550	556	Right-handed alpha

There are 16 sheets in PDB entry 4QQ8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	5	first strand
Strand 2	A	169	171	anti-parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	46	first strand
Strand 2	A	22	25	parallel
Strand 3	A	68	72	parallel
Strand 4	A	95	101	parallel
Strand 5	A	157	162	parallel
Strand 6	A	128	131	parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	253	256	first strand
Strand 2	A	235	237	parallel
Strand 3	A	207	211	parallel
Strand 4	A	272	276	parallel
Strand 5	A	297	301	parallel
Strand 6	A	316	318	parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	411	413	first strand
Strand 2	A	387	391	parallel
Strand 3	A	441	447	parallel
Strand 4	A	469	474	parallel
Strand 5	A	538	543	parallel
Strand 6	A	514	518	parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	5	first strand
Strand 2	B	169	171	anti-parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	46	first strand
Strand 2	B	22	24	parallel
Strand 3	B	68	72	parallel
Strand 4	B	95	101	parallel
Strand 5	B	157	162	parallel
Strand 6	B	128	131	parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	253	256	first strand
Strand 2	B	235	237	parallel
Strand 3	B	207	211	parallel
Strand 4	B	272	276	parallel
Strand 5	B	297	301	parallel
Strand 6	B	316	318	parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	411	413	first strand
Strand 2	B	387	391	parallel
Strand 3	B	441	447	parallel
Strand 4	B	469	474	parallel
Strand 5	B	538	543	parallel
Strand 6	B	514	518	parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	5	first strand
Strand 2	C	169	171	anti-parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	46	first strand
Strand 2	C	22	25	parallel
Strand 3	C	68	72	parallel
Strand 4	C	95	101	parallel
Strand 5	C	157	162	parallel
Strand 6	C	128	131	parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	253	256	first strand
Strand 2	C	235	237	parallel
Strand 3	C	207	211	parallel
Strand 4	C	272	276	parallel
Strand 5	C	297	302	parallel
Strand 6	C	316	319	parallel

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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	411	413	first strand
Strand 2	C	387	391	parallel
Strand 3	C	441	447	parallel
Strand 4	C	469	474	parallel
Strand 5	C	538	543	parallel
Strand 6	C	514	518	parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	5	first strand
Strand 2	D	169	171	anti-parallel

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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	46	first strand
Strand 2	D	22	24	parallel
Strand 3	D	68	72	parallel
Strand 4	D	95	101	parallel
Strand 5	D	157	162	parallel
Strand 6	D	128	131	parallel

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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	253	256	first strand
Strand 2	D	235	237	parallel
Strand 3	D	207	211	parallel
Strand 4	D	272	276	parallel
Strand 5	D	297	301	parallel
Strand 6	D	316	318	parallel

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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	411	413	first strand
Strand 2	D	387	391	parallel
Strand 3	D	441	447	parallel
Strand 4	D	469	474	parallel
Strand 5	D	538	543	parallel
Strand 6	D	514	518	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4QQ8

Analysis of interatomic Contacts of Structural Units in PDB entry:
4QQ8