Analysis of interatomic Contacts of Structural Units in PDB entry:
4QS8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4QS8 entry

There is 1 chain in PDB entry 4QS8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 32LEU 493
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 4QS8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 49Right-handed alpha
Helix 2
2
A
51 72Right-handed alpha
Helix 3
3
A
139 156Right-handed alpha
Helix 4
4
A
199 203Right-handed 310
Helix 5
5
A
206 217Right-handed alpha
Helix 6
6
A
229 242Right-handed alpha
Helix 7
7
A
264 266Right-handed 310
Helix 8
8
A
284 288Right-handed 310
Helix 9
9
A
296 305Right-handed alpha
Helix 10
10
A
314 319Right-handed alpha
Helix 11
11
A
319 339Right-handed alpha
Helix 12
12
A
346 351Right-handed 310
Helix 13
13
A
356 365Right-handed alpha
Helix 14
14
A
371 383Right-handed alpha
Helix 15
15
A
388 421Right-handed alpha
Helix 16
16
A
440 445Right-handed alpha
Helix 17
17
A
446 467Right-handed alpha
Helix 18
18
A
479 489Right-handed alpha
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There are 3 sheets in PDB entry 4QS8. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 82first strand
Strand 2
A
278 282anti-parallel
Strand 3
A
255 262anti-parallel
Strand 4
A
245 251anti-parallel
Strand 5
A
434 439parallel
Strand 6
A
469 473parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 130first strand
Strand 2
A
106 115anti-parallel
Strand 3
A
94 102anti-parallel
Strand 4
A
170 176parallel
Strand 5
A
222 228parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 184first strand
Strand 2
A
187 190anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il