Analysis of interatomic Contacts of Structural Units in PDB entry:
4QSE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4QSE entry

There are 2 chains in PDB entry 4QSE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 28ASP 409
B
 ASP 28ASP 409
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 44 helices in PDB entry 4QSE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 53Right-handed alpha
Helix 2
2
A
65 67Right-handed 310
Helix 3
3
A
68 80Right-handed alpha
Helix 4
4
A
92 99Right-handed alpha
Helix 5
5
A
105 112Right-handed alpha
Helix 6
6
A
116 120Right-handed 310
Helix 7
7
A
121 128Right-handed alpha
Helix 8
8
A
150 156Right-handed alpha
Helix 9
9
A
166 178Right-handed alpha
Helix 10
10
A
179 183Right-handed 310
Helix 11
11
A
194 208Right-handed alpha
Helix 12
12
A
211 215Right-handed 310
Helix 13
13
A
217 233Right-handed alpha
Helix 14
14
A
237 242Right-handed 310
Helix 15
15
A
244 254Right-handed alpha
Helix 16
16
A
263 265Right-handed 310
Helix 17
17
A
266 274Right-handed alpha
Helix 18
18
A
309 323Right-handed alpha
Helix 19
19
A
326 332Right-handed alpha
Helix 20
20
A
347 362Right-handed alpha
Helix 21
21
A
372 389Right-handed alpha
Helix 22
22
A
393 409Right-handed alpha
Helix 23
23
B
41 53Right-handed alpha
Helix 24
24
B
65 67Right-handed 310
Helix 25
25
B
68 80Right-handed alpha
Helix 26
26
B
92 99Right-handed alpha
Helix 27
27
B
105 112Right-handed alpha
Helix 28
28
B
116 120Right-handed 310
Helix 29
29
B
121 128Right-handed alpha
Helix 30
30
B
150 156Right-handed alpha
Helix 31
31
B
166 178Right-handed alpha
Helix 32
32
B
179 183Right-handed 310
Helix 33
33
B
194 208Right-handed alpha
Helix 34
34
B
211 215Right-handed 310
Helix 35
35
B
217 233Right-handed alpha
Helix 36
36
B
237 242Right-handed 310
Helix 37
37
B
244 254Right-handed alpha
Helix 38
38
B
263 265Right-handed 310
Helix 39
39
B
266 274Right-handed alpha
Helix 40
40
B
309 323Right-handed alpha
Helix 41
41
B
326 332Right-handed alpha
Helix 42
42
B
347 362Right-handed alpha
Helix 43
43
B
372 389Right-handed alpha
Helix 44
44
B
393 409Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 4QSE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 63first strand
Strand 2
A
29 35parallel
Strand 3
A
85 89parallel
Strand 4
A
299 303anti-parallel
Strand 5
A
137 138anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 130first strand
Strand 2
A
133 134anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 262first strand
Strand 2
A
145 149anti-parallel
Strand 3
A
278 281anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 295first strand
Strand 2
A
364 365parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 63first strand
Strand 2
B
29 35parallel
Strand 3
B
85 89parallel
Strand 4
B
299 303anti-parallel
Strand 5
B
137 138anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 130first strand
Strand 2
B
133 134anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 262first strand
Strand 2
B
145 149anti-parallel
Strand 3
B
278 281anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
294 295first strand
Strand 2
B
364 365parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il