Analysis of interatomic Contacts of Structural Units in PDB entry:
4QVH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4QVH entry

There are 2 chains in PDB entry 4QVH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2LEU 598
B
 LYS 2LEU 598
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 4QVH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 33Right-handed alpha
Helix 2
2
A
43 53Right-handed alpha
Helix 3
3
A
67 74Right-handed alpha
Helix 4
4
A
83 88Right-handed alpha
Helix 5
5
A
91 98Right-handed alpha
Helix 6
6
A
129 131Right-handed 310
Helix 7
7
A
132 143Right-handed alpha
Helix 8
8
A
154 165Right-handed alpha
Helix 9
9
A
186 202Right-handed alpha
Helix 10
10
A
210 220Right-handed alpha
Helix 11
11
A
229 231Right-handed 310
Helix 12
12
A
232 238Right-handed alpha
Helix 13
13
A
273 284Right-handed alpha
Helix 14
14
A
287 298Right-handed alpha
Helix 15
15
A
305 313Right-handed alpha
Helix 16
16
A
315 328Right-handed alpha
Helix 17
17
A
336 354Right-handed alpha
Helix 18
18
A
357 369Right-handed alpha
Helix 19
19
A
378 382Right-handed 310
Helix 20
20
A
383 388Right-handed 310
Helix 21
21
A
408 413Right-handed 310
Helix 22
22
A
416 437Right-handed alpha
Helix 23
23
A
448 450Right-handed 310
Helix 24
24
A
495 501Right-handed alpha
Helix 25
25
A
502 513Right-handed alpha
Helix 26
26
A
518 539Right-handed alpha
Helix 27
27
A
543 545Right-handed 310
Helix 28
28
B
17 33Right-handed alpha
Helix 29
29
B
43 53Right-handed alpha
Helix 30
30
B
67 74Right-handed alpha
Helix 31
31
B
83 88Right-handed alpha
Helix 32
32
B
91 98Right-handed alpha
Helix 33
33
B
129 131Right-handed 310
Helix 34
34
B
132 142Right-handed alpha
Helix 35
35
B
154 157Right-handed 310
Helix 36
36
B
158 165Right-handed alpha
Helix 37
37
B
186 202Right-handed alpha
Helix 38
38
B
210 220Right-handed alpha
Helix 39
39
B
229 231Right-handed 310
Helix 40
40
B
232 239Right-handed alpha
Helix 41
41
B
273 284Right-handed alpha
Helix 42
42
B
287 298Right-handed alpha
Helix 43
43
B
305 313Right-handed alpha
Helix 44
44
B
315 328Right-handed alpha
Helix 45
45
B
336 353Right-handed alpha
Helix 46
46
B
357 369Right-handed alpha
Helix 47
47
B
378 382Right-handed 310
Helix 48
48
B
383 388Right-handed 310
Helix 49
49
B
405 413Right-handed 310
Helix 50
50
B
416 437Right-handed alpha
Helix 51
51
B
448 450Right-handed 310
Helix 52
52
B
495 501Right-handed alpha
Helix 53
53
B
502 513Right-handed alpha
Helix 54
54
B
518 539Right-handed alpha
Helix 55
55
B
543 545Right-handed 310
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There are 16 sheets in PDB entry 4QVH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 39first strand
Strand 2
A
8 11parallel
Strand 3
A
60 64parallel
Strand 4
A
259 267anti-parallel
Strand 5
A
107 112anti-parallel
Strand 6
A
302 303anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 39first strand
Strand 2
A
8 11parallel
Strand 3
A
60 64parallel
Strand 4
A
259 267anti-parallel
Strand 5
A
329 330parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
103 104anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 148first strand
Strand 2
A
223 228parallel
Strand 3
A
115 119anti-parallel
Strand 4
A
243 246anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 173first strand
Strand 2
A
176 183anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
390 395first strand
Strand 2
A
468 475anti-parallel
Strand 3
A
458 465anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
445 446first strand
Strand 2
A
452 453anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
482 488first strand
Strand 2
A
591 597anti-parallel
Strand 3
A
580 588anti-parallel
Strand 4
A
559 566anti-parallel
Strand 5
A
547 553anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 39first strand
Strand 2
B
8 11parallel
Strand 3
B
60 64parallel
Strand 4
B
259 267anti-parallel
Strand 5
B
107 112anti-parallel
Strand 6
B
302 303anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 39first strand
Strand 2
B
8 11parallel
Strand 3
B
60 64parallel
Strand 4
B
259 267anti-parallel
Strand 5
B
329 330parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 100first strand
Strand 2
B
103 104anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 148first strand
Strand 2
B
223 228parallel
Strand 3
B
115 119anti-parallel
Strand 4
B
243 246anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 171first strand
Strand 2
B
178 183anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
390 395first strand
Strand 2
B
468 475anti-parallel
Strand 3
B
458 465anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
445 446first strand
Strand 2
B
452 453anti-parallel
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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
482 488first strand
Strand 2
B
591 597anti-parallel
Strand 3
B
580 588anti-parallel
Strand 4
B
559 566anti-parallel
Strand 5
B
547 553anti-parallel
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