Analysis of interatomic Contacts of Structural Units in PDB entry:
4QWM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4QWM entry

There is 1 chain in PDB entry 4QWM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 5PHE 570
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 4QWM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 27Right-handed alpha
Helix 2
2
A
68 72Right-handed 310
Helix 3
3
A
152 156Right-handed 310
Helix 4
4
A
167 173Right-handed alpha
Helix 5
5
A
177 181Right-handed 310
Helix 6
6
A
185 202Right-handed alpha
Helix 7
7
A
203 205Right-handed 310
Helix 8
8
A
218 230Right-handed alpha
Helix 9
9
A
231 234Right-handed 310
Helix 10
10
A
258 267Right-handed alpha
Helix 11
11
A
274 283Right-handed alpha
Helix 12
12
A
286 293Right-handed alpha
Helix 13
13
A
294 297Right-handed 310
Helix 14
14
A
299 305Right-handed alpha
Helix 15
15
A
328 333Right-handed alpha
Helix 16
16
A
334 335Right-handed 310
Helix 17
17
A
336 341Right-handed 310
Helix 18
18
A
350 354Right-handed 310
Helix 19
19
A
355 362Right-handed alpha
Helix 20
20
A
363 371Right-handed 310
Helix 21
21
A
372 376Right-handed 310
Helix 22
22
A
387 402Right-handed alpha
Helix 23
23
A
408 421Right-handed alpha
Helix 24
24
A
421 434Right-handed alpha
Helix 25
25
A
456 461Right-handed alpha
Helix 26
26
A
474 478Right-handed 310
Helix 27
27
A
491 511Right-handed alpha
Helix 28
28
A
552 561Right-handed alpha
Helix 29
29
A
562 564Right-handed 310
Helix 30
30
A
566 570Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 4QWM. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 35first strand
Strand 2
A
41 48anti-parallel
Strand 3
A
85 87parallel
Back to list of sheets
Back to top of page

There are 12 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 35first strand
Strand 2
A
41 48anti-parallel
Strand 3
A
54 62anti-parallel
Strand 4
A
113 118anti-parallel
Strand 5
A
159 163anti-parallel
Strand 6
A
127 133parallel
Strand 7
A
207 217parallel
Strand 8
A
239 243parallel
Strand 9
A
343 348parallel
Strand 10
A
441 446parallel
Strand 11
A
537 541parallel
Strand 12
A
545 549anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 98first strand
Strand 2
A
105 106anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il