Analysis of interatomic Contacts of Structural Units in PDB entry:
4R01


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4R01 entry

There are 2 chains in PDB entry 4R01 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0LYS 209
B
 GLY 0LYS 209
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 4R01. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 24Right-handed alpha
Helix 2
2
A
46 50Right-handed 310
Helix 3
3
A
51 56Right-handed alpha
Helix 4
4
A
69 73Right-handed 310
Helix 5
5
A
74 88Right-handed alpha
Helix 6
6
A
112 116Right-handed 310
Helix 7
7
A
120 122Right-handed 310
Helix 8
8
A
123 138Right-handed alpha
Helix 9
9
A
183 196Right-handed alpha
Helix 10
10
B
10 23Right-handed alpha
Helix 11
11
B
46 50Right-handed 310
Helix 12
12
B
74 88Right-handed alpha
Helix 13
13
B
112 116Right-handed 310
Helix 14
14
B
120 122Right-handed 310
Helix 15
15
B
123 138Right-handed alpha
Helix 16
16
B
183 196Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 4R01. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
26 31parallel
Strand 3
A
2 6parallel
Strand 4
A
60 63parallel
Strand 5
A
93 97parallel
Strand 6
A
144 149parallel
Strand 7
A
202 208parallel
Strand 8
A
164 167anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 155first strand
Strand 2
A
180 182parallel
Back to list of sheets
Back to top of page

There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 43first strand
Strand 2
B
26 30parallel
Strand 3
B
2 6parallel
Strand 4
B
60 63parallel
Strand 5
B
93 97parallel
Strand 6
B
145 149parallel
Strand 7
B
202 208parallel
Strand 8
B
164 167anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 155first strand
Strand 2
B
180 182parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il