Analysis of interatomic Contacts of Structural Units in PDB entry:
4R04


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4R04 entry

There is 1 chain in PDB entry 4R04 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 4GLY 1262
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 4R04. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 36Right-handed alpha
Helix 2
2
A
40 62Right-handed alpha
Helix 3
3
A
67 87Right-handed alpha
Helix 4
4
A
107 121Right-handed alpha
Helix 5
5
A
136 156Right-handed alpha
Helix 6
6
A
156 161Right-handed alpha
Helix 7
7
A
166 191Right-handed alpha
Helix 8
8
A
200 213Right-handed alpha
Helix 9
9
A
216 226Right-handed alpha
Helix 10
10
A
228 234Right-handed alpha
Helix 11
11
A
247 259Right-handed alpha
Helix 12
12
A
263 279Right-handed alpha
Helix 13
13
A
307 321Right-handed alpha
Helix 14
14
A
331 335Right-handed 310
Helix 15
15
A
338 351Right-handed alpha
Helix 16
16
A
392 419Right-handed alpha
Helix 17
17
A
422 435Right-handed alpha
Helix 18
18
A
442 450Right-handed alpha
Helix 19
19
A
463 468Right-handed alpha
Helix 20
20
A
469 482Right-handed alpha
Helix 21
21
A
493 498Right-handed alpha
Helix 22
22
A
499 501Right-handed 310
Helix 23
23
A
503 508Right-handed alpha
Helix 24
24
A
511 518Right-handed alpha
Helix 25
25
A
522 538Right-handed alpha
Helix 26
26
A
557 563Right-handed alpha
Helix 27
27
A
589 603Right-handed alpha
Helix 28
28
A
669 682Right-handed alpha
Helix 29
29
A
714 727Right-handed alpha
Helix 30
30
A
766 777Right-handed alpha
Helix 31
31
A
795 812Right-handed alpha
Helix 32
32
A
816 840Right-handed alpha
Helix 33
33
A
852 878Right-handed alpha
Helix 34
34
A
918 936Right-handed alpha
Helix 35
35
A
959 972Right-handed alpha
Helix 36
36
A
973 975Right-handed 310
Helix 37
37
A
981 997Right-handed alpha
Helix 38
38
A
999 1003Right-handed 310
Helix 39
39
A
1005 1019Right-handed alpha
Helix 40
40
A
1043 1053Right-handed alpha
Helix 41
41
A
1055 1067Right-handed alpha
Helix 42
42
A
1074 1094Right-handed alpha
Helix 43
43
A
1118 1135Right-handed alpha
Helix 44
44
A
1204 1208Right-handed alpha
Helix 45
45
A
1247 1260Right-handed alpha
Helix 46
46
A
1306 1312Right-handed alpha
Helix 47
47
A
1349 1353Right-handed alpha
Helix 48
48
A
1433 1452Right-handed alpha
Helix 49
49
A
1465 1467Right-handed 310
Helix 50
50
A
1531 1533Right-handed 310
Helix 51
51
A
1558 1571Right-handed alpha
Helix 52
52
A
1581 1590Right-handed alpha
Helix 53
53
A
1591 1595Right-handed 310
Helix 54
54
A
1676 1679Right-handed 310
Helix 55
55
A
1680 1685Right-handed 310
Helix 56
56
A
1767 1770Right-handed 310
Helix 57
57
A
1771 1776Right-handed alpha
Helix 58
58
A
1789 1797Right-handed alpha
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There are 16 sheets in PDB entry 4R04. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 92first strand
Strand 2
A
366 367anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 97first strand
Strand 2
A
125 126parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 130first strand
Strand 2
A
236 238parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 284first strand
Strand 2
A
380 388anti-parallel
Strand 3
A
372 377anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
630 631first strand
Strand 2
A
620 623anti-parallel
Strand 3
A
607 611anti-parallel
Strand 4
A
579 585parallel
Strand 5
A
647 653parallel
Strand 6
A
692 698parallel
Strand 7
A
737 742parallel
Strand 8
A
779 782anti-parallel
Strand 9
A
789 792anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
746 748first strand
Strand 2
A
754 757anti-parallel
Strand 3
A
763 764anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
884 893first strand
Strand 2
A
898 904anti-parallel
Strand 3
A
910 915anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1037 1038first strand
Strand 2
A
1041 1042anti-parallel
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There are 15 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1069 1070first strand
Strand 2
A
1511 1518anti-parallel
Strand 3
A
1521 1529anti-parallel
Strand 4
A
1537 1544anti-parallel
Strand 5
A
1550 1557anti-parallel
Strand 6
A
1602 1613parallel
Strand 7
A
1617 1623anti-parallel
Strand 8
A
1629 1637anti-parallel
Strand 9
A
1641 1646anti-parallel
Strand 10
A
1653 1657anti-parallel
Strand 11
A
1688 1690parallel
Strand 12
A
1714 1716parallel
Strand 13
A
1757 1765parallel
Strand 14
A
1745 1754anti-parallel
Strand 15
A
1737 1742anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1107 1108first strand
Strand 2
A
1113 1114anti-parallel
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There are 14 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1138 1141first strand
Strand 2
A
1145 1148anti-parallel
Strand 3
A
1221 1223parallel
Strand 4
A
1297 1300parallel
Strand 5
A
1324 1327parallel
Strand 6
A
1345 1348parallel
Strand 7
A
1403 1408parallel
Strand 8
A
1414 1420anti-parallel
Strand 9
A
1425 1431anti-parallel
Strand 10
A
1457 1463parallel
Strand 11
A
1469 1475anti-parallel
Strand 12
A
1480 1487anti-parallel
Strand 13
A
1490 1497anti-parallel
Strand 14
A
1500 1505anti-parallel
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There are 8 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1163 1166first strand
Strand 2
A
1154 1158anti-parallel
Strand 3
A
1288 1291parallel
Strand 4
A
1314 1318parallel
Strand 5
A
1334 1338parallel
Strand 6
A
1389 1393parallel
Strand 7
A
1382 1384anti-parallel
Strand 8
A
1377 1378anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1201 1203first strand
Strand 2
A
1169 1172anti-parallel
Strand 3
A
1230 1233parallel
Strand 4
A
1280 1283anti-parallel
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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1181 1182first strand
Strand 2
A
1187 1188anti-parallel
Strand 3
A
1267 1269parallel
Strand 4
A
1273 1276anti-parallel
Strand 5
A
1236 1238anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1354 1359first strand
Strand 2
A
1362 1368anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1670 1674first strand
Strand 2
A
1698 1702parallel
Strand 3
A
1726 1730parallel
Strand 4
A
1778 1781parallel
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