Analysis of interatomic Contacts of Structural Units in PDB entry:
4R09

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4R09 entry

There are 4 chains in PDB entry 4R09 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 31	LEU 819
B	ARG 31	LEU 819
C	ARG 31	LEU 817
D	ARG 31	SER 816

There are 68 helices in PDB entry 4R09. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	162	167	Right-handed alpha
Helix 2	2	A	303	308	Right-handed 310
Helix 3	3	A	323	329	Right-handed alpha
Helix 4	4	A	330	336	Right-handed 310
Helix 5	5	A	360	366	Right-handed 310
Helix 6	6	A	383	391	Right-handed 310
Helix 7	7	A	411	417	Right-handed 310
Helix 8	8	A	476	481	Right-handed alpha
Helix 9	9	A	564	569	Right-handed alpha
Helix 10	10	A	577	583	Right-handed 310
Helix 11	11	A	619	624	Right-handed alpha
Helix 12	12	A	655	661	Right-handed alpha
Helix 13	13	A	680	687	Right-handed 310
Helix 14	14	A	706	710	Right-handed 310
Helix 15	15	A	752	756	Right-handed 310
Helix 16	16	A	777	779	Right-handed 310
Helix 17	17	A	780	789	Right-handed alpha
Helix 18	18	A	797	801	Right-handed 310
Helix 19	19	B	270	274	Right-handed 310
Helix 20	20	B	303	307	Right-handed 310
Helix 21	21	B	323	329	Right-handed alpha
Helix 22	22	B	331	335	Right-handed 310
Helix 23	23	B	360	366	Right-handed 310
Helix 24	24	B	383	386	Right-handed 310
Helix 25	25	B	387	392	Right-handed alpha
Helix 26	26	B	411	415	Right-handed 310
Helix 27	27	B	476	481	Right-handed alpha
Helix 28	28	B	577	583	Right-handed 310
Helix 29	29	B	619	624	Right-handed alpha
Helix 30	30	B	655	661	Right-handed alpha
Helix 31	31	B	680	687	Right-handed 310
Helix 32	32	B	706	710	Right-handed 310
Helix 33	33	B	752	757	Right-handed 310
Helix 34	34	B	777	790	Right-handed alpha
Helix 35	35	B	797	801	Right-handed 310
Helix 36	36	C	238	242	Right-handed 310
Helix 37	37	C	270	274	Right-handed 310
Helix 38	38	C	303	308	Right-handed 310
Helix 39	39	C	323	330	Right-handed alpha
Helix 40	40	C	331	336	Right-handed 310
Helix 41	41	C	360	366	Right-handed 310
Helix 42	42	C	383	391	Right-handed 310
Helix 43	43	C	411	415	Right-handed 310
Helix 44	44	C	476	481	Right-handed alpha
Helix 45	45	C	564	569	Right-handed alpha
Helix 46	46	C	577	583	Right-handed 310
Helix 47	47	C	619	624	Right-handed alpha
Helix 48	48	C	655	661	Right-handed alpha
Helix 49	49	C	680	687	Right-handed 310
Helix 50	50	C	706	710	Right-handed 310
Helix 51	51	C	780	789	Right-handed alpha
Helix 52	52	D	80	84	Right-handed 310
Helix 53	53	D	303	308	Right-handed 310
Helix 54	54	D	323	330	Right-handed alpha
Helix 55	55	D	331	336	Right-handed 310
Helix 56	56	D	360	366	Right-handed 310
Helix 57	57	D	383	391	Right-handed 310
Helix 58	58	D	411	416	Right-handed 310
Helix 59	59	D	476	481	Right-handed alpha
Helix 60	60	D	564	569	Right-handed alpha
Helix 61	61	D	577	581	Right-handed 310
Helix 62	62	D	619	624	Right-handed alpha
Helix 63	63	D	655	661	Right-handed alpha
Helix 64	64	D	680	687	Right-handed 310
Helix 65	65	D	706	711	Right-handed alpha
Helix 66	66	D	753	757	Right-handed 310
Helix 67	67	D	781	790	Right-handed alpha
Helix 68	68	D	797	801	Right-handed 310

There are 24 sheets in PDB entry 4R09. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 28 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	38	first strand
Strand 2	A	46	48	anti-parallel
Strand 3	A	67	69	parallel
Strand 4	A	91	93	parallel
Strand 5	A	129	131	parallel
Strand 6	A	150	152	parallel
Strand 7	A	174	176	parallel
Strand 8	A	205	207	parallel
Strand 9	A	226	228	parallel
Strand 10	A	250	252	parallel
Strand 11	A	291	293	parallel
Strand 12	A	315	317	parallel
Strand 13	A	341	343	parallel
Strand 14	A	371	373	parallel
Strand 15	A	398	400	parallel
Strand 16	A	422	424	parallel
Strand 17	A	485	487	parallel
Strand 18	A	509	511	parallel
Strand 19	A	534	536	parallel
Strand 20	A	558	560	parallel
Strand 21	A	588	590	parallel
Strand 22	A	612	614	parallel
Strand 23	A	643	645	parallel
Strand 24	A	668	670	parallel
Strand 25	A	692	694	parallel
Strand 26	A	716	718	parallel
Strand 27	A	740	742	parallel
Strand 28	A	766	768	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	78	first strand
Strand 2	A	115	116	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	161	first strand
Strand 2	A	191	192	parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	237	first strand
Strand 2	A	277	278	parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	381	382	first strand
Strand 2	A	408	409	parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	606	607	first strand
Strand 2	A	637	638	parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	774	775	first strand
Strand 2	A	803	805	parallel

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There are 28 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	38	first strand
Strand 2	B	46	48	anti-parallel
Strand 3	B	67	69	parallel
Strand 4	B	91	93	parallel
Strand 5	B	129	131	parallel
Strand 6	B	150	152	parallel
Strand 7	B	174	176	parallel
Strand 8	B	205	207	parallel
Strand 9	B	226	228	parallel
Strand 10	B	250	252	parallel
Strand 11	B	291	293	parallel
Strand 12	B	315	317	parallel
Strand 13	B	341	343	parallel
Strand 14	B	371	373	parallel
Strand 15	B	398	400	parallel
Strand 16	B	422	424	parallel
Strand 17	B	485	487	parallel
Strand 18	B	509	511	parallel
Strand 19	B	534	536	parallel
Strand 20	B	558	560	parallel
Strand 21	B	588	590	parallel
Strand 22	B	612	614	parallel
Strand 23	B	643	645	parallel
Strand 24	B	668	670	parallel
Strand 25	B	692	694	parallel
Strand 26	B	716	718	parallel
Strand 27	B	740	742	parallel
Strand 28	B	766	768	parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	78	first strand
Strand 2	B	115	116	parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	161	first strand
Strand 2	B	191	192	parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	237	first strand
Strand 2	B	277	278	parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	381	382	first strand
Strand 2	B	408	409	parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	774	775	first strand
Strand 2	B	803	805	parallel

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There are 28 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	37	first strand
Strand 2	C	46	48	anti-parallel
Strand 3	C	67	69	parallel
Strand 4	C	91	93	parallel
Strand 5	C	129	131	parallel
Strand 6	C	150	152	parallel
Strand 7	C	174	176	parallel
Strand 8	C	205	207	parallel
Strand 9	C	226	228	parallel
Strand 10	C	250	252	parallel
Strand 11	C	291	293	parallel
Strand 12	C	315	317	parallel
Strand 13	C	341	343	parallel
Strand 14	C	371	373	parallel
Strand 15	C	398	400	parallel
Strand 16	C	422	424	parallel
Strand 17	C	485	487	parallel
Strand 18	C	509	511	parallel
Strand 19	C	534	536	parallel
Strand 20	C	558	560	parallel
Strand 21	C	588	590	parallel
Strand 22	C	612	614	parallel
Strand 23	C	643	645	parallel
Strand 24	C	668	670	parallel
Strand 25	C	692	694	parallel
Strand 26	C	716	718	parallel
Strand 27	C	740	742	parallel
Strand 28	C	766	768	parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	C	115	116	parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	160	161	first strand
Strand 2	C	191	192	parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	237	first strand
Strand 2	C	277	278	parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	381	382	first strand
Strand 2	C	408	409	parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	774	775	first strand
Strand 2	C	803	805	parallel

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There are 28 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	38	first strand
Strand 2	D	46	50	anti-parallel
Strand 3	D	67	71	parallel
Strand 4	D	91	93	parallel
Strand 5	D	129	131	parallel
Strand 6	D	150	152	parallel
Strand 7	D	174	176	parallel
Strand 8	D	205	207	parallel
Strand 9	D	226	228	parallel
Strand 10	D	250	252	parallel
Strand 11	D	291	293	parallel
Strand 12	D	315	317	parallel
Strand 13	D	341	343	parallel
Strand 14	D	371	373	parallel
Strand 15	D	398	400	parallel
Strand 16	D	422	424	parallel
Strand 17	D	485	487	parallel
Strand 18	D	509	511	parallel
Strand 19	D	534	536	parallel
Strand 20	D	558	560	parallel
Strand 21	D	588	590	parallel
Strand 22	D	612	614	parallel
Strand 23	D	643	645	parallel
Strand 24	D	668	670	parallel
Strand 25	D	692	694	parallel
Strand 26	D	716	718	parallel
Strand 27	D	740	742	parallel
Strand 28	D	766	768	parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	78	first strand
Strand 2	D	115	116	parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	160	161	first strand
Strand 2	D	191	192	parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	236	237	first strand
Strand 2	D	277	278	parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	381	382	first strand
Strand 2	D	408	409	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4R09

Analysis of interatomic Contacts of Structural Units in PDB entry:
4R09