Analysis of interatomic Contacts of Structural Units in PDB entry:
4R0M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4R0M entry

There are 2 chains in PDB entry 4R0M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 7LYS 561
A
 SER 5SER 641
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 50 helices in PDB entry 4R0M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
18 28Right-handed alpha
Helix 2
2
B
48 65Right-handed alpha
Helix 3
3
B
79 94Right-handed alpha
Helix 4
4
B
110 123Right-handed alpha
Helix 5
5
B
134 145Right-handed alpha
Helix 6
6
B
155 159Right-handed alpha
Helix 7
7
B
196 211Right-handed alpha
Helix 8
8
B
226 231Right-handed alpha
Helix 9
9
B
234 241Right-handed alpha
Helix 10
10
B
248 255Right-handed alpha
Helix 11
11
B
257 266Right-handed alpha
Helix 12
12
B
274 283Right-handed alpha
Helix 13
13
B
284 285Right-handed 310
Helix 14
14
B
286 290Right-handed 310
Helix 15
15
B
309 321Right-handed alpha
Helix 16
16
B
322 324Right-handed 310
Helix 17
17
B
337 340Right-handed 310
Helix 18
18
B
404 411Right-handed alpha
Helix 19
19
B
448 458Right-handed alpha
Helix 20
20
B
497 512Right-handed alpha
Helix 21
21
B
522 526Right-handed 310
Helix 22
22
B
535 545Right-handed alpha
Helix 23
23
B
548 559Right-handed alpha
Helix 24
24
A
18 27Right-handed alpha
Helix 25
25
A
48 65Right-handed alpha
Helix 26
26
A
79 94Right-handed alpha
Helix 27
27
A
110 123Right-handed alpha
Helix 28
28
A
134 145Right-handed alpha
Helix 29
29
A
155 160Right-handed alpha
Helix 30
30
A
196 211Right-handed alpha
Helix 31
31
A
226 231Right-handed alpha
Helix 32
32
A
234 241Right-handed alpha
Helix 33
33
A
248 255Right-handed alpha
Helix 34
34
A
257 266Right-handed alpha
Helix 35
35
A
274 283Right-handed alpha
Helix 36
36
A
284 285Right-handed 310
Helix 37
37
A
286 290Right-handed 310
Helix 38
38
A
309 321Right-handed alpha
Helix 39
39
A
322 324Right-handed 310
Helix 40
40
A
337 340Right-handed 310
Helix 41
41
A
404 411Right-handed alpha
Helix 42
42
A
448 458Right-handed alpha
Helix 43
43
A
492 512Right-handed alpha
Helix 44
44
A
522 526Right-handed 310
Helix 45
45
A
535 545Right-handed alpha
Helix 46
46
A
548 566Right-handed alpha
Helix 47
47
A
572 587Right-handed alpha
Helix 48
48
A
603 618Right-handed alpha
Helix 49
49
A
623 630Right-handed alpha
Helix 50
50
A
632 640Right-handed alpha
Back to top of page

There are 14 sheets in PDB entry 4R0M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 47first strand
Strand 2
B
33 37anti-parallel
Strand 3
B
243 246parallel
Strand 4
B
217 220parallel
Strand 5
B
270 273parallel
Strand 6
B
300 303parallel
Strand 7
B
330 336parallel
Strand 8
B
341 345anti-parallel
Strand 9
B
365 366anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 99first strand
Strand 2
B
72 76parallel
Strand 3
B
128 130parallel
Strand 4
B
152 154parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 182first strand
Strand 2
B
190 195anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
370 375first strand
Strand 2
B
388 394anti-parallel
Strand 3
B
416 426anti-parallel
Strand 4
B
412 413anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
370 375first strand
Strand 2
B
388 394anti-parallel
Strand 3
B
416 426anti-parallel
Strand 4
B
429 435anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
440 442first strand
Strand 2
B
445 447anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
468 474first strand
Strand 2
B
479 486anti-parallel
Strand 3
B
517 520parallel
Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 8first strand
Strand 2
A
370 375anti-parallel
Strand 3
A
388 394anti-parallel
Strand 4
A
416 426anti-parallel
Strand 5
A
412 413anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 8first strand
Strand 2
A
370 375anti-parallel
Strand 3
A
388 394anti-parallel
Strand 4
A
416 426anti-parallel
Strand 5
A
429 435anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 47first strand
Strand 2
A
33 37anti-parallel
Strand 3
A
243 246parallel
Strand 4
A
217 220parallel
Strand 5
A
270 273parallel
Strand 6
A
300 303parallel
Strand 7
A
330 336parallel
Strand 8
A
341 345anti-parallel
Strand 9
A
365 366anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 99first strand
Strand 2
A
72 76parallel
Strand 3
A
128 130parallel
Strand 4
A
152 154parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 182first strand
Strand 2
A
190 195anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
440 442first strand
Strand 2
A
445 447anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
468 474first strand
Strand 2
A
479 486anti-parallel
Strand 3
A
517 520parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il