Analysis of interatomic Contacts of Structural Units in PDB entry:
4R1K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4R1K entry

There are 2 chains in PDB entry 4R1K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0TYR 163
B
 GLY 0TYR 164
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 4R1K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 48Right-handed alpha
Helix 2
2
A
49 55Right-handed alpha
Helix 3
3
A
58 65Right-handed alpha
Helix 4
4
A
65 79Right-handed alpha
Helix 5
5
A
136 140Right-handed 310
Helix 6
6
B
30 48Right-handed alpha
Helix 7
7
B
49 55Right-handed alpha
Helix 8
8
B
58 65Right-handed alpha
Helix 9
9
B
65 79Right-handed alpha
Helix 10
10
B
136 140Right-handed 310
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There are 4 sheets in PDB entry 4R1K. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 89first strand
Strand 2
A
112 117anti-parallel
Strand 3
A
122 133anti-parallel
Strand 4
A
103 109anti-parallel
Strand 5
A
97 100anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 89first strand
Strand 2
A
112 117anti-parallel
Strand 3
A
122 133anti-parallel
Strand 4
A
141 149anti-parallel
Strand 5
A
152 160anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 89first strand
Strand 2
B
112 117anti-parallel
Strand 3
B
122 133anti-parallel
Strand 4
B
103 109anti-parallel
Strand 5
B
97 100anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 89first strand
Strand 2
B
112 117anti-parallel
Strand 3
B
122 133anti-parallel
Strand 4
B
141 149anti-parallel
Strand 5
B
152 160anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il