Analysis of interatomic Contacts of Structural Units in PDB entry:
4R5D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4R5D entry

There is 1 chain in PDB entry 4R5D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0GLY 440
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 4R5D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 12Right-handed alpha
Helix 2
2
A
14 26Right-handed alpha
Helix 3
3
A
35 41Right-handed alpha
Helix 4
4
A
57 61Right-handed 310
Helix 5
5
A
77 81Right-handed 310
Helix 6
6
A
244 255Right-handed alpha
Helix 7
7
A
268 281Right-handed alpha
Helix 8
8
A
298 312Right-handed alpha
Helix 9
9
A
325 338Right-handed alpha
Helix 10
10
A
355 367Right-handed alpha
Helix 11
11
A
383 395Right-handed alpha
Helix 12
12
A
412 424Right-handed alpha
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There are 2 sheets in PDB entry 4R5D. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
33 34anti-parallel
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There are 16 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
66 68parallel
Strand 3
A
88 90parallel
Strand 4
A
112 114parallel
Strand 5
A
136 138parallel
Strand 6
A
160 162parallel
Strand 7
A
184 186parallel
Strand 8
A
208 210parallel
Strand 9
A
232 234parallel
Strand 10
A
260 262parallel
Strand 11
A
289 291parallel
Strand 12
A
317 319parallel
Strand 13
A
346 348parallel
Strand 14
A
374 376parallel
Strand 15
A
403 405parallel
Strand 16
A
431 433parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il