Analysis of interatomic Contacts of Structural Units in PDB entry:
4R60


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4R60 entry

There are 2 chains in PDB entry 4R60 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3ALA 399
B
 SER 2ALA 399
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 4R60. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 15Right-handed alpha
Helix 2
2
A
28 46Right-handed alpha
Helix 3
3
A
56 64Right-handed alpha
Helix 4
4
A
92 100Right-handed alpha
Helix 5
5
A
114 126Right-handed alpha
Helix 6
6
A
138 147Right-handed alpha
Helix 7
7
A
156 165Right-handed alpha
Helix 8
8
A
168 193Right-handed alpha
Helix 9
9
A
198 214Right-handed alpha
Helix 10
10
A
228 232Right-handed 310
Helix 11
11
A
273 293Right-handed alpha
Helix 12
12
A
299 314Right-handed alpha
Helix 13
13
B
9 15Right-handed alpha
Helix 14
14
B
28 47Right-handed alpha
Helix 15
15
B
56 64Right-handed alpha
Helix 16
16
B
92 100Right-handed alpha
Helix 17
17
B
114 126Right-handed alpha
Helix 18
18
B
138 147Right-handed alpha
Helix 19
19
B
156 165Right-handed alpha
Helix 20
20
B
168 193Right-handed alpha
Helix 21
21
B
198 213Right-handed alpha
Helix 22
22
B
228 232Right-handed 310
Helix 23
23
B
273 293Right-handed alpha
Helix 24
24
B
299 314Right-handed alpha
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There are 12 sheets in PDB entry 4R60. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 109first strand
Strand 2
A
85 89parallel
Strand 3
A
75 79anti-parallel
Strand 4
A
50 54anti-parallel
Strand 5
A
131 133parallel
Strand 6
A
153 155parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 226first strand
Strand 2
A
246 253anti-parallel
Strand 3
A
263 269anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 256first strand
Strand 2
A
259 260anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 332first strand
Strand 2
A
339 343anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 359first strand
Strand 2
A
375 379anti-parallel
Strand 3
A
384 386anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 365first strand
Strand 2
A
369 371anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 109first strand
Strand 2
B
85 89parallel
Strand 3
B
75 79anti-parallel
Strand 4
B
50 54anti-parallel
Strand 5
B
131 133parallel
Strand 6
B
154 155parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
221 226first strand
Strand 2
B
246 253anti-parallel
Strand 3
B
263 269anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 256first strand
Strand 2
B
259 260anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
330 332first strand
Strand 2
B
339 343anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
356 359first strand
Strand 2
B
375 379anti-parallel
Strand 3
B
384 386anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
363 365first strand
Strand 2
B
369 371anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il