Analysis of interatomic Contacts of Structural Units in PDB entry:
4R6J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4R6J entry

There are 4 chains in PDB entry 4R6J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1THR 253
B
 THR 1THR 253
C
 THR 1THR 253
D
 THR 1PRO 252
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 4R6J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 12Right-handed alpha
Helix 2
2
A
14 26Right-handed alpha
Helix 3
3
A
35 41Right-handed alpha
Helix 4
4
A
57 61Right-handed 310
Helix 5
5
A
77 81Right-handed 310
Helix 6
6
A
168 173Right-handed 310
Helix 7
7
A
205 209Right-handed 310
Helix 8
8
A
230 235Right-handed alpha
Helix 9
9
B
8 12Right-handed alpha
Helix 10
10
B
14 26Right-handed alpha
Helix 11
11
B
35 41Right-handed alpha
Helix 12
12
B
57 61Right-handed 310
Helix 13
13
B
77 81Right-handed 310
Helix 14
14
B
148 153Right-handed 310
Helix 15
15
B
168 173Right-handed 310
Helix 16
16
B
204 208Right-handed 310
Helix 17
17
B
230 235Right-handed alpha
Helix 18
18
C
8 12Right-handed alpha
Helix 19
19
C
14 26Right-handed alpha
Helix 20
20
C
35 41Right-handed alpha
Helix 21
21
C
57 61Right-handed 310
Helix 22
22
C
77 83Right-handed 310
Helix 23
23
C
168 172Right-handed 310
Helix 24
24
C
230 235Right-handed alpha
Helix 25
25
C
247 251Right-handed 310
Helix 26
26
D
8 12Right-handed alpha
Helix 27
27
D
14 26Right-handed alpha
Helix 28
28
D
35 41Right-handed alpha
Helix 29
29
D
57 61Right-handed 310
Helix 30
30
D
77 81Right-handed 310
Helix 31
31
D
169 173Right-handed 310
Helix 32
32
D
205 209Right-handed 310
Helix 33
33
D
230 235Right-handed alpha
Helix 34
34
D
246 251Right-handed alpha
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There are 8 sheets in PDB entry 4R6J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
33 34anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
66 68parallel
Strand 3
A
88 90parallel
Strand 4
A
112 114parallel
Strand 5
A
136 138parallel
Strand 6
A
160 162parallel
Strand 7
A
192 194parallel
Strand 8
A
216 218parallel
Strand 9
A
240 242parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 7first strand
Strand 2
B
33 34anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 46first strand
Strand 2
B
66 68parallel
Strand 3
B
88 90parallel
Strand 4
B
112 114parallel
Strand 5
B
136 138parallel
Strand 6
B
160 162parallel
Strand 7
B
192 194parallel
Strand 8
B
216 218parallel
Strand 9
B
240 242parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 7first strand
Strand 2
C
33 34anti-parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
44 46first strand
Strand 2
C
66 68parallel
Strand 3
C
88 90parallel
Strand 4
C
112 114parallel
Strand 5
C
136 138parallel
Strand 6
C
160 162parallel
Strand 7
C
192 194parallel
Strand 8
C
216 218parallel
Strand 9
C
240 242parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 7first strand
Strand 2
D
33 34anti-parallel
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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
44 46first strand
Strand 2
D
66 68parallel
Strand 3
D
88 90parallel
Strand 4
D
112 114parallel
Strand 5
D
136 138parallel
Strand 6
D
160 162parallel
Strand 7
D
192 194parallel
Strand 8
D
216 218parallel
Strand 9
D
240 242parallel
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