Analysis of interatomic Contacts of Structural Units in PDB entry:
4R71

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4R71 entry

There are 3 chains in PDB entry 4R71 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 4	SER 1394
B	MET 1	VAL 571
C	ALA 2	ALA 91

There are108 helices in PDB entry 4R71. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	5	13	Right-handed alpha
Helix 2	2	A	19	29	Right-handed alpha
Helix 3	3	A	33	44	Right-handed alpha
Helix 4	4	A	45	52	Right-handed alpha
Helix 5	5	A	53	55	Right-handed 310
Helix 6	6	A	80	85	Right-handed alpha
Helix 7	7	A	86	104	Right-handed alpha
Helix 8	8	A	107	115	Right-handed alpha
Helix 9	9	A	115	127	Right-handed alpha
Helix 10	10	A	162	177	Right-handed alpha
Helix 11	11	A	182	186	Right-handed 310
Helix 12	12	A	190	204	Right-handed alpha
Helix 13	13	A	208	223	Right-handed alpha
Helix 14	14	A	242	250	Right-handed alpha
Helix 15	15	A	271	280	Right-handed alpha
Helix 16	16	A	1003	1008	Right-handed alpha
Helix 17	17	A	1021	1023	Right-handed 310
Helix 18	18	A	1024	1041	Right-handed alpha
Helix 19	19	A	1084	1095	Right-handed alpha
Helix 20	20	A	1115	1126	Right-handed alpha
Helix 21	21	A	1137	1141	Right-handed 310
Helix 22	22	A	1143	1160	Right-handed alpha
Helix 23	23	A	1164	1168	Right-handed 310
Helix 24	24	A	1174	1179	Right-handed alpha
Helix 25	25	A	1182	1200	Right-handed alpha
Helix 26	26	A	1205	1209	Right-handed 310
Helix 27	27	A	1283	1287	Right-handed 310
Helix 28	28	B	10	20	Right-handed alpha
Helix 29	29	B	28	41	Right-handed alpha
Helix 30	30	B	48	53	Right-handed alpha
Helix 31	31	B	62	76	Right-handed alpha
Helix 32	32	B	87	112	Right-handed alpha
Helix 33	33	B	120	140	Right-handed alpha
Helix 34	34	B	144	152	Right-handed alpha
Helix 35	35	B	163	167	Right-handed 310
Helix 36	36	B	168	175	Right-handed alpha
Helix 37	37	B	180	182	Right-handed 310
Helix 38	38	B	183	192	Right-handed alpha
Helix 39	39	B	226	245	Right-handed alpha
Helix 40	40	B	246	248	Right-handed 310
Helix 41	41	B	254	268	Right-handed alpha
Helix 42	42	B	277	282	Right-handed 310
Helix 43	43	B	283	291	Right-handed alpha
Helix 44	44	B	292	303	Right-handed alpha
Helix 45	45	B	327	348	Right-handed alpha
Helix 46	46	B	367	378	Right-handed alpha
Helix 47	47	B	418	434	Right-handed alpha
Helix 48	48	B	440	452	Right-handed alpha
Helix 49	49	B	456	461	Right-handed alpha
Helix 50	50	B	475	479	Right-handed 310
Helix 51	51	B	504	518	Right-handed alpha
Helix 52	52	B	537	544	Right-handed alpha
Helix 53	53	C	5	15	Right-handed alpha
Helix 54	54	C	19	29	Right-handed alpha
Helix 55	55	C	33	44	Right-handed alpha
Helix 56	56	C	44	52	Right-handed alpha
Helix 57	57	C	53	55	Right-handed 310
Helix 58	58	C	80	85	Right-handed alpha
Helix 59	59	C	86	104	Right-handed alpha
Helix 60	60	C	107	115	Right-handed alpha
Helix 61	61	C	115	127	Right-handed alpha
Helix 62	62	C	162	177	Right-handed alpha
Helix 63	63	C	182	186	Right-handed 310
Helix 64	64	C	189	206	Right-handed alpha
Helix 65	65	C	208	223	Right-handed alpha
Helix 66	66	C	242	250	Right-handed alpha
Helix 67	67	C	271	281	Right-handed alpha
Helix 68	68	C	1003	1008	Right-handed alpha
Helix 69	69	C	1020	1022	Right-handed 310
Helix 70	70	C	1023	1040	Right-handed alpha
Helix 71	71	C	1083	1094	Right-handed alpha
Helix 72	72	C	1114	1126	Right-handed alpha
Helix 73	73	C	1136	1140	Right-handed 310
Helix 74	74	C	1142	1159	Right-handed alpha
Helix 75	75	C	1163	1167	Right-handed 310
Helix 76	76	C	1173	1178	Right-handed alpha
Helix 77	77	C	1181	1198	Right-handed alpha
Helix 78	78	C	1204	1208	Right-handed 310
Helix 79	79	C	1282	1286	Right-handed 310
Helix 80	80	D	10	20	Right-handed alpha
Helix 81	81	D	28	41	Right-handed alpha
Helix 82	82	D	48	55	Right-handed alpha
Helix 83	83	D	62	73	Right-handed alpha
Helix 84	84	D	89	112	Right-handed alpha
Helix 85	85	D	120	140	Right-handed alpha
Helix 86	86	D	144	152	Right-handed alpha
Helix 87	87	D	163	167	Right-handed 310
Helix 88	88	D	168	175	Right-handed alpha
Helix 89	89	D	183	192	Right-handed alpha
Helix 90	90	D	226	245	Right-handed alpha
Helix 91	91	D	254	268	Right-handed alpha
Helix 92	92	D	277	281	Right-handed 310
Helix 93	93	D	283	291	Right-handed alpha
Helix 94	94	D	292	303	Right-handed alpha
Helix 95	95	D	327	347	Right-handed alpha
Helix 96	96	D	367	379	Right-handed alpha
Helix 97	97	D	418	434	Right-handed alpha
Helix 98	98	D	440	452	Right-handed alpha
Helix 99	99	D	456	461	Right-handed alpha
Helix 100	100	D	475	479	Right-handed 310
Helix 101	101	D	504	518	Right-handed alpha
Helix 102	102	D	537	545	Right-handed alpha
Helix 103	103	E	4	17	Right-handed alpha
Helix 104	104	E	51	54	Right-handed 310
Helix 105	105	E	91	104	Right-handed alpha
Helix 106	106	F	4	17	Right-handed alpha
Helix 107	107	F	51	54	Right-handed 310
Helix 108	108	F	91	104	Right-handed alpha

There are 32 sheets in PDB entry 4R71. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	66	first strand
Strand 2	A	70	78	anti-parallel
Strand 3	A	131	139	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	148	first strand
Strand 2	A	152	159	anti-parallel
Strand 3	A	252	260	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	234	first strand
Strand 2	A	237	241	anti-parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1068	1071	first strand
Strand 2	A	1076	1081	anti-parallel
Strand 3	A	1012	1019	parallel
Strand 4	A	1101	1107	parallel
Strand 5	A	1131	1136	parallel
Strand 6	A	1170	1172	parallel

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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1212	1214	first strand
Strand 2	A	1292	1294	anti-parallel
Strand 3	A	1242	1246	anti-parallel
Strand 4	A	1252	1260	anti-parallel
Strand 5	A	1274	1279	anti-parallel
Strand 6	A	1225	1231	anti-parallel
Strand 7	A	1217	1221	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1212	1214	first strand
Strand 2	A	1292	1294	anti-parallel
Strand 3	A	1242	1246	anti-parallel
Strand 4	A	1252	1260	anti-parallel
Strand 5	A	1265	1266	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1236	1238	first strand
Strand 2	A	1268	1270	anti-parallel

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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1300	1311	first strand
Strand 2	A	1356	1369	anti-parallel
Strand 3	A	1336	1343	anti-parallel
Strand 4	A	1330	1333	anti-parallel
Strand 5	A	1374	1379	anti-parallel
Strand 6	A	1382	1392	anti-parallel
Strand 7	A	1300	1311	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	179	first strand
Strand 2	B	200	203	parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	224	first strand
Strand 2	B	206	213	anti-parallel
Strand 3	B	306	308	parallel
Strand 4	B	314	316	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	273	first strand
Strand 2	B	360	364	anti-parallel
Strand 3	B	355	357	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	393	396	first strand
Strand 2	B	399	402	anti-parallel
Strand 3	B	405	406	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	462	463	first strand
Strand 2	B	472	473	parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	483	484	first strand
Strand 2	B	489	501	anti-parallel
Strand 3	B	553	566	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	66	first strand
Strand 2	C	71	78	anti-parallel
Strand 3	C	131	138	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	142	148	first strand
Strand 2	C	152	159	anti-parallel
Strand 3	C	252	260	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	233	234	first strand
Strand 2	C	237	241	anti-parallel

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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1067	1070	first strand
Strand 2	C	1075	1080	anti-parallel
Strand 3	C	1011	1018	parallel
Strand 4	C	1100	1106	parallel
Strand 5	C	1130	1135	parallel
Strand 6	C	1169	1171	parallel

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There are 7 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1211	1213	first strand
Strand 2	C	1291	1293	anti-parallel
Strand 3	C	1241	1245	anti-parallel
Strand 4	C	1251	1259	anti-parallel
Strand 5	C	1273	1278	anti-parallel
Strand 6	C	1224	1230	anti-parallel
Strand 7	C	1216	1220	anti-parallel

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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1211	1213	first strand
Strand 2	C	1291	1293	anti-parallel
Strand 3	C	1241	1245	anti-parallel
Strand 4	C	1251	1259	anti-parallel
Strand 5	C	1264	1265	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1235	1237	first strand
Strand 2	C	1267	1269	anti-parallel

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There are 7 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1299	1310	first strand
Strand 2	C	1355	1368	anti-parallel
Strand 3	C	1335	1340	anti-parallel
Strand 4	C	1329	1332	anti-parallel
Strand 5	C	1373	1378	anti-parallel
Strand 6	C	1381	1391	anti-parallel
Strand 7	C	1299	1310	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	177	179	first strand
Strand 2	D	200	203	parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	219	224	first strand
Strand 2	D	206	213	anti-parallel
Strand 3	D	306	308	parallel
Strand 4	D	314	316	anti-parallel

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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	270	274	first strand
Strand 2	D	360	364	anti-parallel
Strand 3	D	355	357	anti-parallel

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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	393	396	first strand
Strand 2	D	399	402	anti-parallel
Strand 3	D	405	406	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	462	463	first strand
Strand 2	D	472	473	parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	483	485	first strand
Strand 2	D	488	501	anti-parallel
Strand 3	D	553	566	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	46	49	first strand
Strand 2	E	35	39	anti-parallel
Strand 3	E	23	31	anti-parallel
Strand 4	E	67	71	anti-parallel

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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	107	115	first strand
Strand 2	E	120	124	anti-parallel
Strand 3	E	127	131	anti-parallel
Strand 4	E	166	169	parallel
Strand 5	E	151	159	anti-parallel
Strand 6	E	107	115	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	46	49	first strand
Strand 2	F	35	39	anti-parallel
Strand 3	F	23	32	anti-parallel
Strand 4	F	67	71	anti-parallel

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There are 6 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	108	115	first strand
Strand 2	F	120	124	anti-parallel
Strand 3	F	127	131	anti-parallel
Strand 4	F	166	169	parallel
Strand 5	F	151	159	anti-parallel
Strand 6	F	108	115	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4R71

Analysis of interatomic Contacts of Structural Units in PDB entry:
4R71