Analysis of interatomic Contacts of Structural Units in PDB entry:
4R82


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4R82 entry

There are 2 chains in PDB entry 4R82 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 8ASP 177
B
 ALA 9ASP 177
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 4R82. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 25Right-handed alpha
Helix 2
2
A
67 76Right-handed alpha
Helix 3
3
A
88 95Right-handed alpha
Helix 4
4
B
16 25Right-handed alpha
Helix 5
5
B
67 76Right-handed alpha
Helix 6
6
B
88 95Right-handed alpha
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There are 8 sheets in PDB entry 4R82. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 12first strand
Strand 2
B
143 155anti-parallel
Strand 3
B
128 140anti-parallel
Strand 4
B
78 83anti-parallel
Strand 5
B
32 36anti-parallel
Strand 6
B
42 46anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 12first strand
Strand 2
B
143 155anti-parallel
Strand 3
B
58 64anti-parallel
Strand 4
B
50 53anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 46first strand
Strand 2
A
32 36anti-parallel
Strand 3
A
78 83anti-parallel
Strand 4
A
128 140anti-parallel
Strand 5
A
143 155anti-parallel
Strand 6
A
58 64anti-parallel
Strand 7
A
50 53anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 46first strand
Strand 2
A
32 36anti-parallel
Strand 3
A
78 83anti-parallel
Strand 4
A
128 140anti-parallel
Strand 5
A
143 155anti-parallel
Strand 6
B
10 12anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 114first strand
Strand 2
A
121 123anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 165first strand
Strand 2
A
168 170anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 114first strand
Strand 2
B
121 123anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 165first strand
Strand 2
B
168 170anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il