Analysis of interatomic Contacts of Structural Units in PDB entry:
4R84

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4R84 entry

There are 3 chains in PDB entry 4R84 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 24	ALA 497
B	LYS 24	ALA 497
C	LYS 24	GLN 313

There are 95 helices in PDB entry 4R84. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	66	72	Right-handed 310
Helix 2	2	A	122	139	Right-handed alpha
Helix 3	3	A	154	161	Right-handed alpha
Helix 4	4	A	174	187	Right-handed alpha
Helix 5	5	A	201	206	Right-handed alpha
Helix 6	6	A	206	214	Right-handed alpha
Helix 7	7	A	230	241	Right-handed alpha
Helix 8	8	A	245	262	Right-handed alpha
Helix 9	9	A	270	275	Right-handed 310
Helix 10	10	A	277	281	Right-handed 310
Helix 11	11	A	292	297	Right-handed alpha
Helix 12	12	A	300	308	Right-handed alpha
Helix 13	13	A	317	322	Right-handed alpha
Helix 14	14	A	323	335	Right-handed alpha
Helix 15	15	A	337	348	Right-handed alpha
Helix 16	16	A	366	383	Right-handed alpha
Helix 17	17	A	405	414	Right-handed alpha
Helix 18	18	A	427	433	Right-handed alpha
Helix 19	19	A	445	451	Right-handed 310
Helix 20	20	A	452	454	Right-handed 310
Helix 21	21	A	469	476	Right-handed alpha
Helix 22	22	A	476	485	Right-handed alpha
Helix 23	23	A	489	491	Right-handed 310
Helix 24	24	B	66	71	Right-handed alpha
Helix 25	25	B	122	139	Right-handed alpha
Helix 26	26	B	154	161	Right-handed alpha
Helix 27	27	B	174	187	Right-handed alpha
Helix 28	28	B	201	206	Right-handed alpha
Helix 29	29	B	206	214	Right-handed alpha
Helix 30	30	B	230	241	Right-handed alpha
Helix 31	31	B	245	253	Right-handed alpha
Helix 32	32	B	253	262	Right-handed alpha
Helix 33	33	B	270	275	Right-handed 310
Helix 34	34	B	277	281	Right-handed 310
Helix 35	35	B	292	297	Right-handed alpha
Helix 36	36	B	300	308	Right-handed alpha
Helix 37	37	B	318	322	Right-handed 310
Helix 38	38	B	323	335	Right-handed alpha
Helix 39	39	B	337	346	Right-handed alpha
Helix 40	40	B	366	382	Right-handed alpha
Helix 41	41	B	405	414	Right-handed alpha
Helix 42	42	B	427	433	Right-handed alpha
Helix 43	43	B	445	451	Right-handed 310
Helix 44	44	B	452	454	Right-handed 310
Helix 45	45	B	469	476	Right-handed alpha
Helix 46	46	B	476	485	Right-handed alpha
Helix 47	47	B	489	491	Right-handed 310
Helix 48	48	C	68	72	Right-handed 310
Helix 49	49	C	122	139	Right-handed alpha
Helix 50	50	C	154	161	Right-handed alpha
Helix 51	51	C	174	188	Right-handed alpha
Helix 52	52	C	201	206	Right-handed alpha
Helix 53	53	C	206	214	Right-handed alpha
Helix 54	54	C	230	241	Right-handed alpha
Helix 55	55	C	245	253	Right-handed alpha
Helix 56	56	C	253	262	Right-handed alpha
Helix 57	57	C	270	275	Right-handed 310
Helix 58	58	C	277	281	Right-handed 310
Helix 59	59	C	292	297	Right-handed alpha
Helix 60	60	C	300	308	Right-handed alpha
Helix 61	61	C	317	322	Right-handed alpha
Helix 62	62	C	323	335	Right-handed alpha
Helix 63	63	C	337	348	Right-handed alpha
Helix 64	64	C	366	383	Right-handed alpha
Helix 65	65	C	405	414	Right-handed alpha
Helix 66	66	C	427	433	Right-handed alpha
Helix 67	67	C	445	451	Right-handed 310
Helix 68	68	C	452	454	Right-handed 310
Helix 69	69	C	469	476	Right-handed alpha
Helix 70	70	C	476	485	Right-handed alpha
Helix 71	71	C	489	491	Right-handed 310
Helix 72	72	D	66	72	Right-handed 310
Helix 73	73	D	122	139	Right-handed alpha
Helix 74	74	D	154	161	Right-handed alpha
Helix 75	75	D	174	187	Right-handed alpha
Helix 76	76	D	201	206	Right-handed alpha
Helix 77	77	D	206	214	Right-handed alpha
Helix 78	78	D	231	241	Right-handed alpha
Helix 79	79	D	245	253	Right-handed alpha
Helix 80	80	D	253	262	Right-handed alpha
Helix 81	81	D	270	275	Right-handed 310
Helix 82	82	D	277	281	Right-handed 310
Helix 83	83	D	292	297	Right-handed alpha
Helix 84	84	D	300	308	Right-handed alpha
Helix 85	85	D	317	322	Right-handed alpha
Helix 86	86	D	323	335	Right-handed alpha
Helix 87	87	D	337	346	Right-handed alpha
Helix 88	88	D	366	382	Right-handed alpha
Helix 89	89	D	405	413	Right-handed alpha
Helix 90	90	D	427	433	Right-handed alpha
Helix 91	91	D	445	451	Right-handed 310
Helix 92	92	D	452	454	Right-handed 310
Helix 93	93	D	469	476	Right-handed alpha
Helix 94	94	D	476	485	Right-handed alpha
Helix 95	95	D	489	491	Right-handed 310

There are 18 sheets in PDB entry 4R84. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	60	first strand
Strand 2	A	86	95	anti-parallel
Strand 3	A	100	110	anti-parallel
Strand 4	A	25	35	parallel
Strand 5	B	25	35	anti-parallel
Strand 6	B	100	110	parallel
Strand 7	B	86	95	anti-parallel
Strand 8	B	53	60	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	42	first strand
Strand 2	A	75	78	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	165	first strand
Strand 2	A	143	148	parallel
Strand 3	A	113	119	parallel
Strand 4	A	191	198	parallel
Strand 5	A	219	227	parallel
Strand 6	A	284	288	parallel
Strand 7	A	311	313	parallel

Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	169	first strand
Strand 2	A	172	173	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	419	421	first strand
Strand 2	A	395	399	parallel
Strand 3	A	352	356	parallel
Strand 4	A	439	443	parallel
Strand 5	A	456	462	parallel
Strand 6	A	493	496	parallel

Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	42	first strand
Strand 2	B	75	78	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	165	first strand
Strand 2	B	143	148	parallel
Strand 3	B	113	119	parallel
Strand 4	B	191	198	parallel
Strand 5	B	219	227	parallel
Strand 6	B	284	288	parallel
Strand 7	B	311	313	parallel

Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	169	first strand
Strand 2	B	172	173	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	419	421	first strand
Strand 2	B	395	399	parallel
Strand 3	B	352	356	parallel
Strand 4	B	439	443	parallel
Strand 5	B	456	462	parallel
Strand 6	B	493	496	parallel

Back to list of sheets
Back to top of page

There are 8 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	60	first strand
Strand 2	C	86	95	anti-parallel
Strand 3	C	100	110	anti-parallel
Strand 4	C	25	35	parallel
Strand 5	D	25	35	anti-parallel
Strand 6	D	100	110	parallel
Strand 7	D	86	95	anti-parallel
Strand 8	D	53	60	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	42	first strand
Strand 2	C	75	78	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	165	first strand
Strand 2	C	143	148	parallel
Strand 3	C	113	119	parallel
Strand 4	C	191	198	parallel
Strand 5	C	219	227	parallel
Strand 6	C	284	288	parallel
Strand 7	C	311	313	parallel

Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	169	first strand
Strand 2	C	172	173	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	419	421	first strand
Strand 2	C	395	399	parallel
Strand 3	C	352	356	parallel
Strand 4	C	439	443	parallel
Strand 5	C	456	462	parallel
Strand 6	C	493	496	parallel

Back to list of sheets
Back to top of page

There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	42	first strand
Strand 2	D	75	78	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	163	165	first strand
Strand 2	D	143	148	parallel
Strand 3	D	113	119	parallel
Strand 4	D	191	198	parallel
Strand 5	D	219	227	parallel
Strand 6	D	284	288	parallel
Strand 7	D	311	313	parallel

Back to list of sheets
Back to top of page

There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	168	169	first strand
Strand 2	D	172	173	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	419	421	first strand
Strand 2	D	395	399	parallel
Strand 3	D	352	356	parallel
Strand 4	D	439	443	parallel
Strand 5	D	456	462	parallel
Strand 6	D	493	496	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4R84

Analysis of interatomic Contacts of Structural Units in PDB entry:
4R84