Analysis of interatomic Contacts of Structural Units in PDB entry:
4R86


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4R86 entry

There are 2 chains in PDB entry 4R86 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 5LYS 300
B
 ALA 5ALA 301
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 4R86. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 27Right-handed alpha
Helix 2
2
A
27 34Right-handed alpha
Helix 3
3
A
65 81Right-handed alpha
Helix 4
4
A
85 92Right-handed alpha
Helix 5
5
A
116 128Right-handed alpha
Helix 6
6
A
128 134Right-handed alpha
Helix 7
7
A
145 147Right-handed 310
Helix 8
8
A
155 163Right-handed alpha
Helix 9
9
A
165 175Right-handed alpha
Helix 10
10
A
208 214Right-handed alpha
Helix 11
11
A
228 231Right-handed alpha
Helix 12
12
A
264 280Right-handed alpha
Helix 13
13
A
281 283Right-handed 310
Helix 14
14
B
19 27Right-handed alpha
Helix 15
15
B
27 35Right-handed alpha
Helix 16
16
B
66 81Right-handed alpha
Helix 17
17
B
82 84Right-handed 310
Helix 18
18
B
85 92Right-handed alpha
Helix 19
19
B
116 128Right-handed alpha
Helix 20
20
B
128 134Right-handed alpha
Helix 21
21
B
145 147Right-handed 310
Helix 22
22
B
155 162Right-handed alpha
Helix 23
23
B
165 175Right-handed alpha
Helix 24
24
B
208 214Right-handed alpha
Helix 25
25
B
228 231Right-handed alpha
Helix 26
26
B
264 280Right-handed alpha
Helix 27
27
B
281 283Right-handed 310
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There are 10 sheets in PDB entry 4R86. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 237first strand
Strand 2
A
148 154anti-parallel
Strand 3
A
195 200anti-parallel
Strand 4
A
180 185anti-parallel
Strand 5
A
94 97anti-parallel
Strand 6
A
8 14anti-parallel
Strand 7
A
53 55anti-parallel
Strand 8
A
41 48anti-parallel
Strand 9
A
297 299anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 237first strand
Strand 2
A
148 154anti-parallel
Strand 3
A
195 200anti-parallel
Strand 4
A
180 185anti-parallel
Strand 5
A
94 97anti-parallel
Strand 6
A
8 14anti-parallel
Strand 7
A
58 60anti-parallel
Strand 8
A
41 48anti-parallel
Strand 9
A
297 299anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 143first strand
Strand 2
A
250 259anti-parallel
Strand 3
A
246 247anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 143first strand
Strand 2
A
250 259anti-parallel
Strand 3
A
101 110anti-parallel
Strand 4
A
287 293anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 219first strand
Strand 2
A
225 227anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 96first strand
Strand 2
B
8 14anti-parallel
Strand 3
B
53 60anti-parallel
Strand 4
B
41 47anti-parallel
Strand 5
B
296 299anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 143first strand
Strand 2
B
250 259anti-parallel
Strand 3
B
246 247anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 143first strand
Strand 2
B
250 259anti-parallel
Strand 3
B
101 110anti-parallel
Strand 4
B
287 293anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 184first strand
Strand 2
B
195 200anti-parallel
Strand 3
B
148 154anti-parallel
Strand 4
B
232 237anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 219first strand
Strand 2
B
225 227anti-parallel
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