Analysis of interatomic Contacts of Structural Units in PDB entry:
4R88

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4R88 entry

There are 4 chains in PDB entry 4R88 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PRO 411
B	MET 1	ASN 413
C	MET 1	PRO 411
D	MET 1	ALA 32

There are110 helices in PDB entry 4R88. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	75	88	Right-handed alpha
Helix 2	2	A	91	109	Right-handed alpha
Helix 3	3	A	125	138	Right-handed alpha
Helix 4	4	A	139	141	Right-handed 310
Helix 5	5	A	159	171	Right-handed alpha
Helix 6	6	A	178	182	Right-handed 310
Helix 7	7	A	184	203	Right-handed alpha
Helix 8	8	A	219	232	Right-handed alpha
Helix 9	9	A	233	235	Right-handed 310
Helix 10	10	A	243	248	Right-handed 310
Helix 11	11	A	249	264	Right-handed alpha
Helix 12	12	A	270	278	Right-handed alpha
Helix 13	13	A	292	299	Right-handed alpha
Helix 14	14	A	321	333	Right-handed alpha
Helix 15	15	A	337	343	Right-handed alpha
Helix 16	16	A	344	348	Right-handed 310
Helix 17	17	A	349	356	Right-handed alpha
Helix 18	18	A	358	362	Right-handed 310
Helix 19	19	A	379	387	Right-handed alpha
Helix 20	20	B	75	88	Right-handed alpha
Helix 21	21	B	91	109	Right-handed alpha
Helix 22	22	B	125	138	Right-handed alpha
Helix 23	23	B	159	170	Right-handed alpha
Helix 24	24	B	178	182	Right-handed 310
Helix 25	25	B	184	203	Right-handed alpha
Helix 26	26	B	219	232	Right-handed alpha
Helix 27	27	B	233	235	Right-handed 310
Helix 28	28	B	243	248	Right-handed 310
Helix 29	29	B	249	264	Right-handed alpha
Helix 30	30	B	270	278	Right-handed alpha
Helix 31	31	B	292	299	Right-handed alpha
Helix 32	32	B	321	333	Right-handed alpha
Helix 33	33	B	337	343	Right-handed alpha
Helix 34	34	B	344	348	Right-handed 310
Helix 35	35	B	349	356	Right-handed alpha
Helix 36	36	B	358	362	Right-handed 310
Helix 37	37	B	379	387	Right-handed alpha
Helix 38	38	C	75	88	Right-handed alpha
Helix 39	39	C	91	109	Right-handed alpha
Helix 40	40	C	125	138	Right-handed alpha
Helix 41	41	C	159	170	Right-handed alpha
Helix 42	42	C	178	182	Right-handed 310
Helix 43	43	C	184	203	Right-handed alpha
Helix 44	44	C	219	231	Right-handed alpha
Helix 45	45	C	233	235	Right-handed 310
Helix 46	46	C	243	248	Right-handed 310
Helix 47	47	C	249	264	Right-handed alpha
Helix 48	48	C	270	278	Right-handed alpha
Helix 49	49	C	292	299	Right-handed alpha
Helix 50	50	C	321	333	Right-handed alpha
Helix 51	51	C	337	343	Right-handed alpha
Helix 52	52	C	344	348	Right-handed 310
Helix 53	53	C	349	356	Right-handed alpha
Helix 54	54	C	358	362	Right-handed 310
Helix 55	55	C	379	387	Right-handed alpha
Helix 56	56	D	75	88	Right-handed alpha
Helix 57	57	D	91	109	Right-handed alpha
Helix 58	58	D	125	138	Right-handed alpha
Helix 59	59	D	159	171	Right-handed alpha
Helix 60	60	D	178	182	Right-handed 310
Helix 61	61	D	184	203	Right-handed alpha
Helix 62	62	D	219	231	Right-handed alpha
Helix 63	63	D	233	235	Right-handed 310
Helix 64	64	D	243	248	Right-handed 310
Helix 65	65	D	249	264	Right-handed alpha
Helix 66	66	D	270	278	Right-handed alpha
Helix 67	67	D	292	299	Right-handed alpha
Helix 68	68	D	321	333	Right-handed alpha
Helix 69	69	D	337	343	Right-handed alpha
Helix 70	70	D	344	348	Right-handed 310
Helix 71	71	D	349	356	Right-handed alpha
Helix 72	72	D	358	362	Right-handed 310
Helix 73	73	D	379	387	Right-handed alpha
Helix 74	74	E	75	88	Right-handed alpha
Helix 75	75	E	91	109	Right-handed alpha
Helix 76	76	E	125	138	Right-handed alpha
Helix 77	77	E	159	171	Right-handed alpha
Helix 78	78	E	178	182	Right-handed 310
Helix 79	79	E	184	203	Right-handed alpha
Helix 80	80	E	219	231	Right-handed alpha
Helix 81	81	E	233	235	Right-handed 310
Helix 82	82	E	243	248	Right-handed 310
Helix 83	83	E	249	264	Right-handed alpha
Helix 84	84	E	270	278	Right-handed alpha
Helix 85	85	E	292	299	Right-handed alpha
Helix 86	86	E	321	333	Right-handed alpha
Helix 87	87	E	337	342	Right-handed alpha
Helix 88	88	E	343	348	Right-handed 310
Helix 89	89	E	349	356	Right-handed alpha
Helix 90	90	E	358	362	Right-handed 310
Helix 91	91	E	379	387	Right-handed alpha
Helix 92	92	F	75	88	Right-handed alpha
Helix 93	93	F	91	109	Right-handed alpha
Helix 94	94	F	125	138	Right-handed alpha
Helix 95	95	F	139	141	Right-handed 310
Helix 96	96	F	159	171	Right-handed alpha
Helix 97	97	F	178	182	Right-handed 310
Helix 98	98	F	184	203	Right-handed alpha
Helix 99	99	F	219	231	Right-handed alpha
Helix 100	100	F	233	235	Right-handed 310
Helix 101	101	F	243	248	Right-handed 310
Helix 102	102	F	249	264	Right-handed alpha
Helix 103	103	F	270	278	Right-handed alpha
Helix 104	104	F	292	299	Right-handed alpha
Helix 105	105	F	321	333	Right-handed alpha
Helix 106	106	F	337	344	Right-handed alpha
Helix 107	107	F	345	348	Right-handed 310
Helix 108	108	F	349	356	Right-handed alpha
Helix 109	109	F	358	362	Right-handed 310
Helix 110	110	F	379	386	Right-handed alpha

There are 17 sheets in PDB entry 4R88. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	29	first strand
Strand 2	A	14	20	anti-parallel
Strand 3	A	2	7	anti-parallel
Strand 4	A	41	42	parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	49	first strand
Strand 2	A	372	375	anti-parallel
Strand 3	A	390	395	anti-parallel
Strand 4	A	398	403	anti-parallel
Strand 5	B	408	409	anti-parallel

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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	57	first strand
Strand 2	A	111	119	parallel
Strand 3	A	143	149	parallel
Strand 4	A	174	175	parallel
Strand 5	A	205	210	parallel
Strand 6	A	237	241	parallel
Strand 7	A	266	269	parallel
Strand 8	A	303	305	parallel

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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	29	first strand
Strand 2	B	14	20	anti-parallel
Strand 3	B	2	7	anti-parallel
Strand 4	B	40	49	parallel
Strand 5	B	372	375	anti-parallel
Strand 6	B	390	395	anti-parallel
Strand 7	B	398	402	anti-parallel

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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	57	first strand
Strand 2	B	111	119	parallel
Strand 3	B	143	149	parallel
Strand 4	B	174	175	parallel
Strand 5	B	205	210	parallel
Strand 6	B	237	241	parallel
Strand 7	B	266	269	parallel
Strand 8	B	303	305	parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	29	first strand
Strand 2	C	14	20	anti-parallel
Strand 3	C	2	7	anti-parallel
Strand 4	C	40	42	parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	49	first strand
Strand 2	C	372	375	anti-parallel
Strand 3	C	390	395	anti-parallel
Strand 4	C	398	403	anti-parallel
Strand 5	E	408	409	anti-parallel

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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	57	first strand
Strand 2	C	111	119	parallel
Strand 3	C	143	149	parallel
Strand 4	C	174	175	parallel
Strand 5	C	205	210	parallel
Strand 6	C	237	241	parallel
Strand 7	C	266	269	parallel
Strand 8	C	303	305	parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	408	409	first strand
Strand 2	E	398	403	anti-parallel
Strand 3	E	390	395	anti-parallel
Strand 4	E	372	375	anti-parallel
Strand 5	E	48	49	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	30	first strand
Strand 2	D	14	20	anti-parallel
Strand 3	D	2	8	anti-parallel
Strand 4	D	40	42	parallel

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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	30	first strand
Strand 2	D	14	20	anti-parallel
Strand 3	D	2	8	anti-parallel
Strand 4	D	47	49	parallel
Strand 5	D	372	375	anti-parallel
Strand 6	D	390	395	anti-parallel
Strand 7	D	398	403	anti-parallel
Strand 8	F	408	409	anti-parallel

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There are 8 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	57	first strand
Strand 2	D	111	119	parallel
Strand 3	D	143	149	parallel
Strand 4	D	174	175	parallel
Strand 5	D	205	210	parallel
Strand 6	D	237	241	parallel
Strand 7	D	266	269	parallel
Strand 8	D	303	305	parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	408	409	first strand
Strand 2	F	398	403	anti-parallel
Strand 3	F	390	395	anti-parallel
Strand 4	F	372	375	anti-parallel
Strand 5	F	48	49	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	23	29	first strand
Strand 2	E	14	20	anti-parallel
Strand 3	E	2	7	anti-parallel
Strand 4	E	41	42	parallel

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There are 8 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	57	first strand
Strand 2	E	111	119	parallel
Strand 3	E	143	149	parallel
Strand 4	E	174	175	parallel
Strand 5	E	205	210	parallel
Strand 6	E	237	241	parallel
Strand 7	E	266	269	parallel
Strand 8	E	303	305	parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	23	29	first strand
Strand 2	F	14	20	anti-parallel
Strand 3	F	2	7	anti-parallel
Strand 4	F	40	42	parallel

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There are 8 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	52	57	first strand
Strand 2	F	111	119	parallel
Strand 3	F	143	149	parallel
Strand 4	F	174	175	parallel
Strand 5	F	205	210	parallel
Strand 6	F	237	241	parallel
Strand 7	F	266	269	parallel
Strand 8	F	303	305	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4R88

Analysis of interatomic Contacts of Structural Units in PDB entry:
4R88