Analysis of interatomic Contacts of Structural Units in PDB entry:
4R8D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4R8D entry

There are 2 chains in PDB entry 4R8D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 5THR 373
B
 PRO 7PRO 371
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 4R8D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 13Right-handed 310
Helix 2
2
A
16 20Right-handed 310
Helix 3
3
A
46 62Right-handed alpha
Helix 4
4
A
72 88Right-handed alpha
Helix 5
5
A
92 94Right-handed 310
Helix 6
6
A
100 114Right-handed alpha
Helix 7
7
A
128 137Right-handed alpha
Helix 8
8
A
153 165Right-handed alpha
Helix 9
9
A
183 194Right-handed alpha
Helix 10
10
A
204 208Right-handed 310
Helix 11
11
A
212 217Right-handed 310
Helix 12
12
A
236 240Right-handed 310
Helix 13
13
A
247 258Right-handed alpha
Helix 14
14
A
264 276Right-handed alpha
Helix 15
15
A
277 302Right-handed alpha
Helix 16
16
A
321 332Right-handed alpha
Helix 17
17
A
351 366Right-handed alpha
Helix 18
18
A
367 369Right-handed 310
Helix 19
19
B
9 13Right-handed 310
Helix 20
20
B
16 20Right-handed 310
Helix 21
21
B
46 62Right-handed alpha
Helix 22
22
B
72 88Right-handed alpha
Helix 23
23
B
92 94Right-handed 310
Helix 24
24
B
100 114Right-handed alpha
Helix 25
25
B
128 137Right-handed alpha
Helix 26
26
B
153 165Right-handed alpha
Helix 27
27
B
183 194Right-handed alpha
Helix 28
28
B
204 208Right-handed 310
Helix 29
29
B
212 217Right-handed 310
Helix 30
30
B
236 240Right-handed 310
Helix 31
31
B
247 258Right-handed alpha
Helix 32
32
B
264 276Right-handed alpha
Helix 33
33
B
277 283Right-handed alpha
Helix 34
34
B
284 302Right-handed alpha
Helix 35
35
B
321 332Right-handed alpha
Helix 36
36
B
351 366Right-handed alpha
Helix 37
37
B
367 369Right-handed 310
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There are 6 sheets in PDB entry 4R8D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 35first strand
Strand 2
A
334 335parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 99first strand
Strand 2
A
242 245anti-parallel
Strand 3
A
224 229anti-parallel
Strand 4
A
197 201parallel
Strand 5
A
168 172parallel
Strand 6
A
119 124parallel
Strand 7
A
140 145parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 306first strand
Strand 2
A
313 317anti-parallel
Strand 3
A
344 348anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 35first strand
Strand 2
B
334 335parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 99first strand
Strand 2
B
242 245anti-parallel
Strand 3
B
224 229anti-parallel
Strand 4
B
197 201parallel
Strand 5
B
168 172parallel
Strand 6
B
119 124parallel
Strand 7
B
140 145parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
305 306first strand
Strand 2
B
313 317anti-parallel
Strand 3
B
344 348anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il