Analysis of interatomic Contacts of Structural Units in PDB entry:
4R8F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4R8F entry

There are 4 chains in PDB entry 4R8F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 3LEU 470
B
 ASN 4LEU 470
C
 ASN 4LEU 470
D
 ASN 4LEU 470
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 4R8F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 19Right-handed alpha
Helix 2
2
A
21 35Right-handed alpha
Helix 3
3
A
77 81Right-handed 310
Helix 4
4
A
121 125Right-handed 310
Helix 5
5
A
199 204Right-handed alpha
Helix 6
6
A
212 224Right-handed alpha
Helix 7
7
A
226 228Right-handed 310
Helix 8
8
A
257 277Right-handed alpha
Helix 9
9
A
278 283Right-handed 310
Helix 10
10
A
304 307Right-handed 310
Helix 11
11
A
308 322Right-handed alpha
Helix 12
12
A
327 334Right-handed alpha
Helix 13
13
A
350 354Right-handed 310
Helix 14
14
A
379 394Right-handed alpha
Helix 15
15
A
411 421Right-handed alpha
Helix 16
16
A
444 466Right-handed alpha
Helix 17
17
B
5 19Right-handed alpha
Helix 18
18
B
21 36Right-handed alpha
Helix 19
19
B
77 81Right-handed 310
Helix 20
20
B
199 204Right-handed alpha
Helix 21
21
B
212 224Right-handed alpha
Helix 22
22
B
226 228Right-handed 310
Helix 23
23
B
257 277Right-handed alpha
Helix 24
24
B
294 298Right-handed 310
Helix 25
25
B
304 307Right-handed 310
Helix 26
26
B
308 322Right-handed alpha
Helix 27
27
B
327 334Right-handed alpha
Helix 28
28
B
380 394Right-handed alpha
Helix 29
29
B
411 421Right-handed alpha
Helix 30
30
B
444 466Right-handed alpha
Helix 31
31
C
5 19Right-handed alpha
Helix 32
32
C
21 36Right-handed alpha
Helix 33
33
C
77 81Right-handed 310
Helix 34
34
C
121 125Right-handed 310
Helix 35
35
C
199 204Right-handed alpha
Helix 36
36
C
212 224Right-handed alpha
Helix 37
37
C
226 228Right-handed 310
Helix 38
38
C
257 277Right-handed alpha
Helix 39
39
C
304 307Right-handed 310
Helix 40
40
C
308 322Right-handed alpha
Helix 41
41
C
327 334Right-handed alpha
Helix 42
42
C
350 354Right-handed 310
Helix 43
43
C
379 394Right-handed alpha
Helix 44
44
C
411 421Right-handed alpha
Helix 45
45
C
444 466Right-handed alpha
Helix 46
46
D
5 19Right-handed alpha
Helix 47
47
D
21 36Right-handed alpha
Helix 48
48
D
77 81Right-handed 310
Helix 49
49
D
121 125Right-handed 310
Helix 50
50
D
201 205Right-handed 310
Helix 51
51
D
212 224Right-handed alpha
Helix 52
52
D
261 277Right-handed alpha
Helix 53
53
D
304 307Right-handed 310
Helix 54
54
D
308 322Right-handed alpha
Helix 55
55
D
327 334Right-handed alpha
Helix 56
56
D
374 378Right-handed 310
Helix 57
57
D
379 393Right-handed alpha
Helix 58
58
D
411 421Right-handed alpha
Helix 59
59
D
444 466Right-handed alpha
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There are 13 sheets in PDB entry 4R8F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 40first strand
Strand 2
A
56 62parallel
Strand 3
A
66 72anti-parallel
Strand 4
A
286 292anti-parallel
Strand 5
A
83 88parallel
Strand 6
A
336 340parallel
Strand 7
A
423 428parallel
Strand 8
A
366 370anti-parallel
Strand 9
A
397 401parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 151first strand
Strand 2
A
129 137anti-parallel
Strand 3
A
230 239anti-parallel
Strand 4
A
93 105anti-parallel
Strand 5
A
108 116anti-parallel
Strand 6
A
182 183anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 246first strand
Strand 2
A
252 255anti-parallel
Strand 3
A
439 442anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 40first strand
Strand 2
B
56 62parallel
Strand 3
B
66 72anti-parallel
Strand 4
B
286 292anti-parallel
Strand 5
B
83 88parallel
Strand 6
B
336 340parallel
Strand 7
B
423 428parallel
Strand 8
B
367 370anti-parallel
Strand 9
B
398 401parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 151first strand
Strand 2
B
129 138anti-parallel
Strand 3
B
230 239anti-parallel
Strand 4
B
93 101anti-parallel
Strand 5
B
110 116anti-parallel
Strand 6
B
182 183anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
244 246first strand
Strand 2
B
252 255anti-parallel
Strand 3
B
439 442anti-parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
39 40first strand
Strand 2
C
56 62parallel
Strand 3
C
66 72anti-parallel
Strand 4
C
286 292anti-parallel
Strand 5
C
83 88parallel
Strand 6
C
336 340parallel
Strand 7
C
423 428parallel
Strand 8
C
366 370anti-parallel
Strand 9
C
397 401parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
146 151first strand
Strand 2
C
129 137anti-parallel
Strand 3
C
230 239anti-parallel
Strand 4
C
93 101anti-parallel
Strand 5
C
109 116anti-parallel
Strand 6
C
182 185anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
244 246first strand
Strand 2
C
252 255anti-parallel
Strand 3
C
439 442anti-parallel
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There are 9 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
39 40first strand
Strand 2
D
56 62parallel
Strand 3
D
66 72anti-parallel
Strand 4
D
286 292anti-parallel
Strand 5
D
83 88parallel
Strand 6
D
336 340parallel
Strand 7
D
423 428parallel
Strand 8
D
365 370anti-parallel
Strand 9
D
396 401parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
111 116first strand
Strand 2
D
93 101anti-parallel
Strand 3
D
230 239anti-parallel
Strand 4
D
129 138anti-parallel
Strand 5
D
145 151anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
244 246first strand
Strand 2
D
252 255anti-parallel
Strand 3
D
439 442anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
343 344first strand
Strand 2
D
430 431parallel
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