Analysis of interatomic Contacts of Structural Units in PDB entry:
4R8G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4R8G entry

There are 4 chains in PDB entry 4R8G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 ARG 698LEU 1025
B
 GLN 3THR 146
A
 GLN 3THR 146
H
 ALA 1ALA 147
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 4R8G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
E
698 761Right-handed alpha
Helix 2
2
E
767 787Right-handed alpha
Helix 3
3
E
802 804Right-handed 310
Helix 4
4
E
805 828Right-handed alpha
Helix 5
5
E
829 847Right-handed alpha
Helix 6
6
E
852 857Right-handed alpha
Helix 7
7
E
872 880Right-handed alpha
Helix 8
8
E
963 975Right-handed alpha
Helix 9
9
E
977 979Right-handed 310
Helix 10
10
B
5 18Right-handed alpha
Helix 11
11
B
28 30Right-handed 310
Helix 12
12
B
31 38Right-handed alpha
Helix 13
13
B
44 56Right-handed alpha
Helix 14
14
B
64 76Right-handed alpha
Helix 15
15
B
82 91Right-handed alpha
Helix 16
16
B
101 112Right-handed alpha
Helix 17
17
B
117 128Right-handed alpha
Helix 18
18
B
138 146Right-handed alpha
Helix 19
19
A
5 20Right-handed alpha
Helix 20
20
A
29 39Right-handed alpha
Helix 21
21
A
44 56Right-handed alpha
Helix 22
22
A
65 77Right-handed alpha
Helix 23
23
A
81 91Right-handed alpha
Helix 24
24
A
101 112Right-handed alpha
Helix 25
25
A
117 128Right-handed alpha
Helix 26
26
A
137 146Right-handed alpha
Helix 27
27
H
5 22Right-handed alpha
Helix 28
28
H
28 39Right-handed alpha
Helix 29
29
H
44 54Right-handed alpha
Helix 30
30
H
65 75Right-handed alpha
Helix 31
31
H
80 92Right-handed alpha
Helix 32
32
H
101 111Right-handed alpha
Helix 33
33
H
119 129Right-handed alpha
Helix 34
34
H
138 146Right-handed alpha
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There are 5 sheets in PDB entry 4R8G. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
922 925first strand
Strand 2
E
911 915anti-parallel
Strand 3
E
900 907anti-parallel
Strand 4
E
886 893anti-parallel
Strand 5
E
957 961anti-parallel
Strand 6
E
941 946anti-parallel
Strand 7
E
929 935anti-parallel
Strand 8
E
981 984parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
987 990first strand
Strand 2
E
998 1004anti-parallel
Strand 3
E
1018 1022parallel
Strand 4
E
1009 1012anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 100first strand
Strand 2
B
136 137anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 28first strand
Strand 2
A
62 64anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
99 100first strand
Strand 2
H
136 137anti-parallel
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