Analysis of interatomic Contacts of Structural Units in PDB entry:
4R8H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4R8H entry

There are 2 chains in PDB entry 4R8H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 9GLY 208
B
 ASP 9THR 209
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 4R8H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 17Right-handed alpha
Helix 2
2
A
73 78Right-handed 310
Helix 3
3
A
100 110Right-handed alpha
Helix 4
4
A
111 138Right-handed alpha
Helix 5
5
A
139 153Right-handed alpha
Helix 6
6
A
169 178Right-handed alpha
Helix 7
7
A
180 194Right-handed alpha
Helix 8
8
B
10 18Right-handed alpha
Helix 9
9
B
73 78Right-handed 310
Helix 10
10
B
100 110Right-handed alpha
Helix 11
11
B
111 138Right-handed alpha
Helix 12
12
B
139 153Right-handed alpha
Helix 13
13
B
169 178Right-handed alpha
Helix 14
14
B
180 194Right-handed alpha
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There are 6 sheets in PDB entry 4R8H. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 24first strand
Strand 2
A
93 99anti-parallel
Strand 3
A
39 45anti-parallel
Strand 4
A
70 71anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 31first strand
Strand 2
A
86 89anti-parallel
Strand 3
A
47 53anti-parallel
Strand 4
A
59 66anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 160first strand
Strand 2
A
163 167anti-parallel
Strand 3
A
203 207anti-parallel
Strand 4
A
197 200anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 24first strand
Strand 2
B
93 99anti-parallel
Strand 3
B
39 45anti-parallel
Strand 4
B
70 71anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 31first strand
Strand 2
B
86 89anti-parallel
Strand 3
B
47 53anti-parallel
Strand 4
B
59 66anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 159first strand
Strand 2
B
163 167anti-parallel
Strand 3
B
203 207anti-parallel
Strand 4
B
197 198anti-parallel
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