Analysis of interatomic Contacts of Structural Units in PDB entry:
4R8L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4R8L entry

There are 4 chains in PDB entry 4R8L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 8	PRO 361
B	GLU 8	THR 362
C	GLU 8	PRO 361
D	GLU 8	THR 362

There are 46 helices in PDB entry 4R8L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	19	22	Right-handed 310
Helix 2	2	A	34	41	Right-handed alpha
Helix 3	3	A	47	53	Right-handed alpha
Helix 4	4	A	84	88	Right-handed 310
Helix 5	5	A	89	103	Right-handed alpha
Helix 6	6	A	118	129	Right-handed alpha
Helix 7	7	A	152	167	Right-handed alpha
Helix 8	8	A	184	186	Right-handed 310
Helix 9	9	A	248	256	Right-handed alpha
Helix 10	10	A	276	289	Right-handed alpha
Helix 11	11	A	324	338	Right-handed alpha
Helix 12	12	A	342	351	Right-handed alpha
Helix 13	13	B	19	22	Right-handed 310
Helix 14	14	B	34	41	Right-handed alpha
Helix 15	15	B	47	53	Right-handed alpha
Helix 16	16	B	84	88	Right-handed 310
Helix 17	17	B	89	103	Right-handed alpha
Helix 18	18	B	118	129	Right-handed alpha
Helix 19	19	B	152	167	Right-handed alpha
Helix 20	20	B	184	186	Right-handed 310
Helix 21	21	B	248	256	Right-handed alpha
Helix 22	22	B	276	289	Right-handed alpha
Helix 23	23	B	324	338	Right-handed alpha
Helix 24	24	B	342	351	Right-handed alpha
Helix 25	25	C	34	41	Right-handed alpha
Helix 26	26	C	47	53	Right-handed alpha
Helix 27	27	C	84	88	Right-handed 310
Helix 28	28	C	89	103	Right-handed alpha
Helix 29	29	C	118	129	Right-handed alpha
Helix 30	30	C	152	167	Right-handed alpha
Helix 31	31	C	184	186	Right-handed 310
Helix 32	32	C	248	256	Right-handed alpha
Helix 33	33	C	276	289	Right-handed alpha
Helix 34	34	C	324	338	Right-handed alpha
Helix 35	35	C	342	351	Right-handed alpha
Helix 36	36	D	34	41	Right-handed alpha
Helix 37	37	D	47	53	Right-handed alpha
Helix 38	38	D	84	88	Right-handed 310
Helix 39	39	D	89	103	Right-handed alpha
Helix 40	40	D	118	129	Right-handed alpha
Helix 41	41	D	152	167	Right-handed alpha
Helix 42	42	D	184	186	Right-handed 310
Helix 43	43	D	248	256	Right-handed alpha
Helix 44	44	D	276	289	Right-handed alpha
Helix 45	45	D	324	338	Right-handed alpha
Helix 46	46	D	342	351	Right-handed alpha

There are 20 sheets in PDB entry 4R8L. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	62	first strand
Strand 2	A	72	83	anti-parallel
Strand 3	A	9	17	parallel
Strand 4	A	109	113	parallel
Strand 5	A	137	140	parallel
Strand 6	A	172	176	parallel
Strand 7	A	179	182	anti-parallel
Strand 8	A	206	208	anti-parallel
Strand 9	A	212	214	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	25	first strand
Strand 2	A	28	30	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	131	first strand
Strand 2	A	229	230	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	188	first strand
Strand 2	A	197	198	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	242	first strand
Strand 2	A	262	267	parallel
Strand 3	A	292	297	parallel
Strand 4	A	317	319	parallel

Back to list of sheets
Back to top of page

There are 9 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	62	first strand
Strand 2	B	72	83	anti-parallel
Strand 3	B	9	17	parallel
Strand 4	B	109	113	parallel
Strand 5	B	137	140	parallel
Strand 6	B	172	176	parallel
Strand 7	B	179	182	anti-parallel
Strand 8	B	206	208	anti-parallel
Strand 9	B	212	214	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	25	first strand
Strand 2	B	28	30	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	131	first strand
Strand 2	B	229	230	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	188	first strand
Strand 2	B	197	198	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	242	first strand
Strand 2	B	262	267	parallel
Strand 3	B	292	297	parallel
Strand 4	B	317	319	parallel

Back to list of sheets
Back to top of page

There are 9 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	62	first strand
Strand 2	C	72	83	anti-parallel
Strand 3	C	9	17	parallel
Strand 4	C	109	113	parallel
Strand 5	C	137	140	parallel
Strand 6	C	172	176	parallel
Strand 7	C	179	182	anti-parallel
Strand 8	C	206	208	anti-parallel
Strand 9	C	212	214	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	25	first strand
Strand 2	C	28	30	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	131	first strand
Strand 2	C	229	230	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	188	first strand
Strand 2	C	197	198	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	242	first strand
Strand 2	C	262	267	parallel
Strand 3	C	292	297	parallel
Strand 4	C	317	319	parallel

Back to list of sheets
Back to top of page

There are 9 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	62	first strand
Strand 2	D	72	83	anti-parallel
Strand 3	D	9	17	parallel
Strand 4	D	109	113	parallel
Strand 5	D	137	140	parallel
Strand 6	D	172	176	parallel
Strand 7	D	179	182	anti-parallel
Strand 8	D	206	208	anti-parallel
Strand 9	D	212	214	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	25	first strand
Strand 2	D	28	30	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	131	first strand
Strand 2	D	229	230	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	188	first strand
Strand 2	D	197	198	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	242	first strand
Strand 2	D	262	267	parallel
Strand 3	D	292	297	parallel
Strand 4	D	317	319	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4R8L

Analysis of interatomic Contacts of Structural Units in PDB entry:
4R8L