Analysis of interatomic Contacts of Structural Units in PDB entry:
4R8O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4R8O entry

There are 2 chains in PDB entry 4R8O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 30ASP 127
B
 ASP 30ASP 127
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There is 1 helix in PDB entry 4R8O. Click on helix number for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
120 123Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 4R8O. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 39first strand
Strand 2
A
42 52anti-parallel
Strand 3
A
55 66anti-parallel
Strand 4
A
72 81anti-parallel
Strand 5
A
86 97anti-parallel
Strand 6
A
102 110anti-parallel
Strand 7
A
115 118anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 39first strand
Strand 2
A
42 52anti-parallel
Strand 3
A
55 66anti-parallel
Strand 4
A
72 81anti-parallel
Strand 5
A
86 97anti-parallel
Strand 6
A
102 110anti-parallel
Strand 7
A
124 126anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 39first strand
Strand 2
B
42 52anti-parallel
Strand 3
B
55 66anti-parallel
Strand 4
B
72 81anti-parallel
Strand 5
B
86 97anti-parallel
Strand 6
B
102 110anti-parallel
Strand 7
B
115 118anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 39first strand
Strand 2
B
42 52anti-parallel
Strand 3
B
55 66anti-parallel
Strand 4
B
72 81anti-parallel
Strand 5
B
86 97anti-parallel
Strand 6
B
102 110anti-parallel
Strand 7
B
124 126anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il