Analysis of interatomic Contacts of Structural Units in PDB entry:
4RAG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RAG entry

There is 1 chain in PDB entry 4RAG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2TYR 368
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 4RAG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
65 81Right-handed alpha
Helix 2
2
A
82 87Right-handed alpha
Helix 3
3
A
93 120Right-handed alpha
Helix 4
4
A
168 178Right-handed alpha
Helix 5
5
A
200 203Right-handed 310
Helix 6
6
A
238 243Right-handed alpha
Helix 7
7
A
246 259Right-handed alpha
Helix 8
8
A
263 278Right-handed alpha
Helix 9
9
A
298 321Right-handed alpha
Helix 10
10
A
329 340Right-handed alpha
Helix 11
11
A
350 353Right-handed 310
Helix 12
12
A
354 366Right-handed alpha
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There are 5 sheets in PDB entry 4RAG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 9first strand
Strand 2
A
31 33anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 19first strand
Strand 2
A
22 29anti-parallel
Strand 3
A
284 290anti-parallel
Strand 4
A
231 237anti-parallel
Strand 5
A
148 153anti-parallel
Strand 6
A
156 160anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 44first strand
Strand 2
A
54 62anti-parallel
Strand 3
A
126 127anti-parallel
Strand 4
A
197 198anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 44first strand
Strand 2
A
54 62anti-parallel
Strand 3
A
129 134anti-parallel
Strand 4
A
138 144anti-parallel
Strand 5
A
220 225anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 183first strand
Strand 2
A
186 187anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il