Analysis of interatomic Contacts of Structural Units in PDB entry:
4RBM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RBM entry

There is 1 chain in PDB entry 4RBM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 229VAL 680
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 4RBM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
229 234Right-handed alpha
Helix 2
2
A
252 266Right-handed alpha
Helix 3
3
A
283 301Right-handed alpha
Helix 4
4
A
330 335Right-handed alpha
Helix 5
5
A
353 369Right-handed alpha
Helix 6
6
A
374 378Right-handed 310
Helix 7
7
A
390 395Right-handed alpha
Helix 8
8
A
395 407Right-handed alpha
Helix 9
9
A
409 413Right-handed 310
Helix 10
10
A
429 435Right-handed alpha
Helix 11
11
A
457 462Right-handed alpha
Helix 12
12
A
488 496Right-handed alpha
Helix 13
13
A
512 522Right-handed alpha
Helix 14
14
A
539 546Right-handed alpha
Helix 15
15
A
552 570Right-handed alpha
Helix 16
16
A
577 584Right-handed alpha
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There are 5 sheets in PDB entry 4RBM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 274first strand
Strand 2
A
242 248parallel
Strand 3
A
307 311parallel
Strand 4
A
345 349parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 321first strand
Strand 2
A
328 329anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
416 420first strand
Strand 2
A
380 385parallel
Strand 3
A
438 442parallel
Strand 4
A
470 475parallel
Strand 5
A
501 507parallel
Strand 6
A
585 589anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
445 446first strand
Strand 2
A
449 450anti-parallel
Strand 3
A
455 456anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
605 606first strand
Strand 2
A
617 622anti-parallel
Strand 3
A
647 652anti-parallel
Strand 4
A
635 641anti-parallel
Strand 5
A
627 632anti-parallel
Strand 6
A
660 667anti-parallel
Strand 7
A
674 680anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il