Analysis of interatomic Contacts of Structural Units in PDB entry:
4RDB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RDB entry

There is 1 chain in PDB entry 4RDB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0ILE 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 4RDB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
57 62Right-handed alpha
Helix 2
2
A
95 97Right-handed 310
Helix 3
3
A
106 110Right-handed alpha
Helix 4
4
A
121 131Right-handed alpha
Helix 5
5
A
133 139Right-handed 310
Helix 6
6
A
192 195Right-handed 310
Helix 7
7
A
250 254Right-handed 310
Helix 8
8
A
304 308Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 4RDB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 83first strand
Strand 2
A
66 71anti-parallel
Strand 3
A
111 118anti-parallel
Strand 4
A
158 165anti-parallel
Strand 5
A
171 179anti-parallel
Strand 6
A
32 39parallel
Strand 7
A
99 105anti-parallel
Strand 8
A
91 94anti-parallel
Strand 9
A
87 88anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 54first strand
Strand 2
A
42 45anti-parallel
Strand 3
A
325 333parallel
Strand 4
A
181 190parallel
Strand 5
A
272 282anti-parallel
Strand 6
A
261 266anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 143first strand
Strand 2
A
218 220anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 201first strand
Strand 2
A
204 213anti-parallel
Strand 3
A
246 248anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 201first strand
Strand 2
A
204 213anti-parallel
Strand 3
A
290 295anti-parallel
Strand 4
A
311 316anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 216first strand
Strand 2
A
231 232anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il