Analysis of interatomic Contacts of Structural Units in PDB entry:
4RDC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RDC entry

There is 1 chain in PDB entry 4RDC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 53LYS 416
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 4RDC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
67 88Right-handed alpha
Helix 2
2
A
106 120Right-handed alpha
Helix 3
3
A
131 146Right-handed alpha
Helix 4
4
A
159 163Right-handed 310
Helix 5
5
A
172 177Right-handed alpha
Helix 6
6
A
177 188Right-handed alpha
Helix 7
7
A
202 219Right-handed alpha
Helix 8
8
A
236 245Right-handed alpha
Helix 9
9
A
256 270Right-handed alpha
Helix 10
10
A
280 283Right-handed 310
Helix 11
11
A
284 286Right-handed 310
Helix 12
12
A
287 292Right-handed alpha
Helix 13
13
A
293 296Right-handed 310
Helix 14
14
A
310 325Right-handed alpha
Helix 15
15
A
329 353Right-handed alpha
Helix 16
16
A
354 358Right-handed 310
Helix 17
17
A
359 374Right-handed alpha
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There are 4 sheets in PDB entry 4RDC. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 102first strand
Strand 2
A
55 61parallel
Strand 3
A
126 127parallel
Strand 4
A
149 151parallel
Strand 5
A
166 168parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 229first strand
Strand 2
A
193 199parallel
Strand 3
A
250 254parallel
Strand 4
A
275 278parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 302first strand
Strand 2
A
397 404anti-parallel
Strand 3
A
409 414anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 378first strand
Strand 2
A
381 385anti-parallel
Strand 3
A
391 392anti-parallel
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