Analysis of interatomic Contacts of Structural Units in PDB entry:
4RDP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RDP entry

There are 2 chains in PDB entry 4RDP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2THR 287
B
 LYS 2THR 287
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 4RDP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 56Right-handed alpha
Helix 2
2
A
60 68Right-handed alpha
Helix 3
3
A
106 121Right-handed alpha
Helix 4
4
A
163 177Right-handed alpha
Helix 5
5
A
177 185Right-handed alpha
Helix 6
6
A
192 203Right-handed alpha
Helix 7
7
A
247 260Right-handed alpha
Helix 8
8
A
271 275Right-handed 310
Helix 9
9
B
41 56Right-handed alpha
Helix 10
10
B
60 69Right-handed alpha
Helix 11
11
B
106 121Right-handed alpha
Helix 12
12
B
140 143Right-handed 310
Helix 13
13
B
163 177Right-handed alpha
Helix 14
14
B
177 185Right-handed alpha
Helix 15
15
B
192 203Right-handed alpha
Helix 16
16
B
247 260Right-handed alpha
Helix 17
17
B
271 275Right-handed 310
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There are 6 sheets in PDB entry 4RDP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 40first strand
Strand 2
A
87 95anti-parallel
Strand 3
A
235 242anti-parallel
Strand 4
A
101 105first strand
Strand 5
A
188 190parallel
Strand 6
A
137 138anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 84first strand
Strand 2
A
235 242anti-parallel
Strand 3
A
87 95anti-parallel
Strand 4
A
3 10first strand
Strand 5
A
278 285anti-parallel
Strand 6
A
264 267anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 149first strand
Strand 2
A
154 156anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 40first strand
Strand 2
B
87 95anti-parallel
Strand 3
B
235 242anti-parallel
Strand 4
B
101 105first strand
Strand 5
B
188 190parallel
Strand 6
B
137 138anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 84first strand
Strand 2
B
235 242anti-parallel
Strand 3
B
87 95anti-parallel
Strand 4
B
3 10first strand
Strand 5
B
278 285anti-parallel
Strand 6
B
265 267anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 149first strand
Strand 2
B
154 156anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il