Analysis of interatomic Contacts of Structural Units in PDB entry:
4RDQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4RDQ entry

There are 4 chains in PDB entry 4RDQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	SER 367
B	THR 2	SER 367
C	THR 2	SER 367
D	THR 2	ARG 125

There are110 helices in PDB entry 4RDQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	17	23	Right-handed 310
Helix 2	2	A	27	53	Right-handed alpha
Helix 3	3	A	55	71	Right-handed alpha
Helix 4	4	A	74	98	Right-handed alpha
Helix 5	5	A	103	114	Right-handed alpha
Helix 6	6	A	118	144	Right-handed alpha
Helix 7	7	A	144	149	Right-handed alpha
Helix 8	8	A	153	160	Right-handed alpha
Helix 9	9	A	164	174	Right-handed alpha
Helix 10	10	A	179	181	Right-handed 310
Helix 11	11	A	182	198	Right-handed alpha
Helix 12	12	A	203	230	Right-handed alpha
Helix 13	13	A	233	255	Right-handed alpha
Helix 14	14	A	274	295	Right-handed alpha
Helix 15	15	A	306	323	Right-handed alpha
Helix 16	16	A	348	355	Right-handed 310
Helix 17	17	B	17	23	Right-handed 310
Helix 18	18	B	27	53	Right-handed alpha
Helix 19	19	B	55	71	Right-handed alpha
Helix 20	20	B	74	98	Right-handed alpha
Helix 21	21	B	103	114	Right-handed alpha
Helix 22	22	B	118	144	Right-handed alpha
Helix 23	23	B	144	149	Right-handed alpha
Helix 24	24	B	153	160	Right-handed alpha
Helix 25	25	B	164	174	Right-handed alpha
Helix 26	26	B	179	181	Right-handed 310
Helix 27	27	B	182	198	Right-handed alpha
Helix 28	28	B	203	230	Right-handed alpha
Helix 29	29	B	233	255	Right-handed alpha
Helix 30	30	B	274	295	Right-handed alpha
Helix 31	31	B	306	323	Right-handed alpha
Helix 32	32	B	348	355	Right-handed 310
Helix 33	33	C	17	23	Right-handed 310
Helix 34	34	C	27	53	Right-handed alpha
Helix 35	35	C	55	71	Right-handed alpha
Helix 36	36	C	74	98	Right-handed alpha
Helix 37	37	C	103	114	Right-handed alpha
Helix 38	38	C	118	144	Right-handed alpha
Helix 39	39	C	144	149	Right-handed alpha
Helix 40	40	C	153	160	Right-handed alpha
Helix 41	41	C	164	174	Right-handed alpha
Helix 42	42	C	179	181	Right-handed 310
Helix 43	43	C	182	198	Right-handed alpha
Helix 44	44	C	203	230	Right-handed alpha
Helix 45	45	C	233	255	Right-handed alpha
Helix 46	46	C	274	295	Right-handed alpha
Helix 47	47	C	306	323	Right-handed alpha
Helix 48	48	C	348	355	Right-handed 310
Helix 49	49	D	17	23	Right-handed 310
Helix 50	50	D	27	53	Right-handed alpha
Helix 51	51	D	55	71	Right-handed alpha
Helix 52	52	D	74	98	Right-handed alpha
Helix 53	53	D	103	114	Right-handed alpha
Helix 54	54	D	118	144	Right-handed alpha
Helix 55	55	D	144	149	Right-handed alpha
Helix 56	56	D	153	160	Right-handed alpha
Helix 57	57	D	164	174	Right-handed alpha
Helix 58	58	D	179	181	Right-handed 310
Helix 59	59	D	182	198	Right-handed alpha
Helix 60	60	D	203	230	Right-handed alpha
Helix 61	61	D	233	255	Right-handed alpha
Helix 62	62	D	274	295	Right-handed alpha
Helix 63	63	D	306	323	Right-handed alpha
Helix 64	64	D	348	355	Right-handed 310
Helix 65	65	E	17	23	Right-handed 310
Helix 66	66	E	27	53	Right-handed alpha
Helix 67	67	E	55	71	Right-handed alpha
Helix 68	68	E	74	98	Right-handed alpha
Helix 69	69	E	103	114	Right-handed alpha
Helix 70	70	E	118	144	Right-handed alpha
Helix 71	71	E	144	149	Right-handed alpha
Helix 72	72	E	153	160	Right-handed alpha
Helix 73	73	E	164	174	Right-handed alpha
Helix 74	74	E	179	181	Right-handed 310
Helix 75	75	E	182	198	Right-handed alpha
Helix 76	76	E	203	230	Right-handed alpha
Helix 77	77	E	233	255	Right-handed alpha
Helix 78	78	E	274	295	Right-handed alpha
Helix 79	79	E	306	323	Right-handed alpha
Helix 80	80	E	348	355	Right-handed 310
Helix 81	81	F	121	126	Right-handed alpha
Helix 82	82	F	183	187	Right-handed alpha
Helix 83	83	G	28	32	Right-handed 310
Helix 84	84	G	62	65	Right-handed 310
Helix 85	85	G	87	91	Right-handed 310
Helix 86	86	G	189	191	Right-handed 310
Helix 87	87	H	121	126	Right-handed alpha
Helix 88	88	H	183	187	Right-handed alpha
Helix 89	89	I	28	32	Right-handed 310
Helix 90	90	I	62	65	Right-handed 310
Helix 91	91	I	87	91	Right-handed 310
Helix 92	92	I	189	191	Right-handed 310
Helix 93	93	J	121	126	Right-handed alpha
Helix 94	94	J	183	187	Right-handed alpha
Helix 95	95	K	28	32	Right-handed 310
Helix 96	96	K	62	65	Right-handed 310
Helix 97	97	K	87	91	Right-handed 310
Helix 98	98	K	189	191	Right-handed 310
Helix 99	99	L	121	126	Right-handed alpha
Helix 100	100	L	183	187	Right-handed alpha
Helix 101	101	M	28	32	Right-handed 310
Helix 102	102	M	62	65	Right-handed 310
Helix 103	103	M	87	91	Right-handed 310
Helix 104	104	M	189	191	Right-handed 310
Helix 105	105	N	121	126	Right-handed alpha
Helix 106	106	N	183	187	Right-handed alpha
Helix 107	107	O	28	32	Right-handed 310
Helix 108	108	O	62	65	Right-handed 310
Helix 109	109	O	87	91	Right-handed 310
Helix 110	110	O	189	191	Right-handed 310

There are 50 sheets in PDB entry 4RDQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW, AX,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	70	75	anti-parallel
Strand 4	F	62	67	anti-parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	102	106	parallel
Strand 3	F	84	90	anti-parallel
Strand 4	F	33	38	anti-parallel
Strand 5	F	45	49	anti-parallel
Strand 6	F	53	54	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	114	118	first strand
Strand 2	F	129	139	anti-parallel
Strand 3	F	173	182	anti-parallel
Strand 4	F	159	163	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	153	155	first strand
Strand 2	F	145	150	anti-parallel
Strand 3	F	191	197	anti-parallel
Strand 4	F	205	210	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	6	first strand
Strand 2	G	18	25	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	68	73	anti-parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	110	114	parallel
Strand 3	G	92	99	anti-parallel
Strand 4	G	34	39	anti-parallel
Strand 5	G	46	52	anti-parallel
Strand 6	G	57	60	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	110	114	parallel
Strand 3	G	92	99	anti-parallel
Strand 4	G	103	106	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	123	127	first strand
Strand 2	G	138	148	anti-parallel
Strand 3	G	178	187	anti-parallel
Strand 4	G	166	168	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	123	127	first strand
Strand 2	G	138	148	anti-parallel
Strand 3	G	178	187	anti-parallel
Strand 4	G	172	173	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	154	157	first strand
Strand 2	G	197	202	anti-parallel
Strand 3	G	207	212	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	70	75	anti-parallel
Strand 4	H	62	67	anti-parallel

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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	13	first strand
Strand 2	H	102	106	parallel
Strand 3	H	84	90	anti-parallel
Strand 4	H	33	38	anti-parallel
Strand 5	H	45	49	anti-parallel
Strand 6	H	53	54	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	114	118	first strand
Strand 2	H	129	139	anti-parallel
Strand 3	H	173	182	anti-parallel
Strand 4	H	159	163	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	153	155	first strand
Strand 2	H	145	150	anti-parallel
Strand 3	H	191	197	anti-parallel
Strand 4	H	205	210	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	6	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	78	83	anti-parallel
Strand 4	I	68	73	anti-parallel

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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	110	114	parallel
Strand 3	I	92	99	anti-parallel
Strand 4	I	34	39	anti-parallel
Strand 5	I	46	52	anti-parallel
Strand 6	I	57	60	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	110	114	parallel
Strand 3	I	92	99	anti-parallel
Strand 4	I	103	106	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	123	127	first strand
Strand 2	I	138	148	anti-parallel
Strand 3	I	178	187	anti-parallel
Strand 4	I	166	168	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	123	127	first strand
Strand 2	I	138	148	anti-parallel
Strand 3	I	178	187	anti-parallel
Strand 4	I	172	173	anti-parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	154	157	first strand
Strand 2	I	197	202	anti-parallel
Strand 3	I	207	212	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	7	first strand
Strand 2	J	19	25	anti-parallel
Strand 3	J	70	75	anti-parallel
Strand 4	J	62	67	anti-parallel

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There are 6 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	13	first strand
Strand 2	J	102	106	parallel
Strand 3	J	84	90	anti-parallel
Strand 4	J	33	38	anti-parallel
Strand 5	J	45	49	anti-parallel
Strand 6	J	53	54	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	114	118	first strand
Strand 2	J	129	139	anti-parallel
Strand 3	J	173	182	anti-parallel
Strand 4	J	159	163	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	153	155	first strand
Strand 2	J	145	150	anti-parallel
Strand 3	J	192	197	anti-parallel
Strand 4	J	205	207	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	6	first strand
Strand 2	K	18	25	anti-parallel
Strand 3	K	78	83	anti-parallel
Strand 4	K	68	73	anti-parallel

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There are 6 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	110	114	parallel
Strand 3	K	92	99	anti-parallel
Strand 4	K	34	39	anti-parallel
Strand 5	K	46	52	anti-parallel
Strand 6	K	57	60	anti-parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	110	114	parallel
Strand 3	K	92	99	anti-parallel
Strand 4	K	103	106	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	123	127	first strand
Strand 2	K	138	148	anti-parallel
Strand 3	K	178	187	anti-parallel
Strand 4	K	166	168	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	123	127	first strand
Strand 2	K	138	148	anti-parallel
Strand 3	K	178	187	anti-parallel
Strand 4	K	172	173	anti-parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	154	157	first strand
Strand 2	K	197	202	anti-parallel
Strand 3	K	207	212	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	129	139	anti-parallel
Strand 3	L	173	182	anti-parallel
Strand 4	L	159	163	anti-parallel

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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	155	first strand
Strand 2	L	145	150	anti-parallel
Strand 3	L	192	197	anti-parallel
Strand 4	L	205	207	anti-parallel

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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	3	6	first strand
Strand 2	M	18	25	anti-parallel
Strand 3	M	78	83	anti-parallel
Strand 4	M	68	73	anti-parallel

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There are 6 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	12	first strand
Strand 2	M	110	114	parallel
Strand 3	M	92	99	anti-parallel
Strand 4	M	34	39	anti-parallel
Strand 5	M	46	52	anti-parallel
Strand 6	M	57	60	anti-parallel

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There are 4 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	12	first strand
Strand 2	M	110	114	parallel
Strand 3	M	92	99	anti-parallel
Strand 4	M	103	106	anti-parallel

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There are 4 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	123	127	first strand
Strand 2	M	138	148	anti-parallel
Strand 3	M	178	187	anti-parallel
Strand 4	M	166	168	anti-parallel

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There are 4 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	123	127	first strand
Strand 2	M	138	148	anti-parallel
Strand 3	M	178	187	anti-parallel
Strand 4	M	172	173	anti-parallel

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There are 3 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	154	157	first strand
Strand 2	M	197	202	anti-parallel
Strand 3	M	207	212	anti-parallel

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There are 4 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	4	7	first strand
Strand 2	N	19	25	anti-parallel
Strand 3	N	70	75	anti-parallel
Strand 4	N	62	67	anti-parallel

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There are 6 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	13	first strand
Strand 2	N	102	106	parallel
Strand 3	N	84	90	anti-parallel
Strand 4	N	33	38	anti-parallel
Strand 5	N	45	49	anti-parallel
Strand 6	N	53	54	anti-parallel

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There are 4 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	114	118	first strand
Strand 2	N	129	139	anti-parallel
Strand 3	N	173	182	anti-parallel
Strand 4	N	159	163	anti-parallel

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There are 4 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	153	155	first strand
Strand 2	N	145	150	anti-parallel
Strand 3	N	191	197	anti-parallel
Strand 4	N	205	210	anti-parallel

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There are 4 strands in AS sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	3	6	first strand
Strand 2	O	18	25	anti-parallel
Strand 3	O	78	83	anti-parallel
Strand 4	O	68	73	anti-parallel

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There are 6 strands in AT sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	10	12	first strand
Strand 2	O	110	114	parallel
Strand 3	O	92	99	anti-parallel
Strand 4	O	34	39	anti-parallel
Strand 5	O	46	52	anti-parallel
Strand 6	O	57	60	anti-parallel

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There are 4 strands in AU sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	10	12	first strand
Strand 2	O	110	114	parallel
Strand 3	O	92	99	anti-parallel
Strand 4	O	103	106	anti-parallel

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There are 4 strands in AV sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	123	127	first strand
Strand 2	O	138	148	anti-parallel
Strand 3	O	178	187	anti-parallel
Strand 4	O	166	168	anti-parallel

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There are 4 strands in AW sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	123	127	first strand
Strand 2	O	138	148	anti-parallel
Strand 3	O	178	187	anti-parallel
Strand 4	O	172	173	anti-parallel

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There are 3 strands in AX sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	154	157	first strand
Strand 2	O	197	202	anti-parallel
Strand 3	O	207	212	anti-parallel

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Analysis of interatomic Contacts of Structural Units in PDB entry: 4RDQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
4RDQ