Analysis of interatomic Contacts of Structural Units in PDB entry:
4RDR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RDR entry

There is 1 chain in PDB entry 4RDR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 18PHE 734
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 4RDR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 43Right-handed alpha
Helix 2
2
A
48 54Right-handed alpha
Helix 3
3
A
77 81Right-handed 310
Helix 4
4
A
105 107Right-handed 310
Helix 5
5
A
117 123Right-handed 310
Helix 6
6
A
144 146Right-handed 310
Helix 7
7
A
254 261Right-handed alpha
Helix 8
8
A
262 267Right-handed alpha
Helix 9
9
A
268 271Right-handed 310
Helix 10
10
A
272 276Right-handed 310
Helix 11
11
A
436 445Right-handed alpha
Helix 12
12
A
489 495Right-handed alpha
Helix 13
13
A
500 502Right-handed 310
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There are 6 sheets in PDB entry 4RDR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 38first strand
Strand 2
A
109 115anti-parallel
Strand 3
A
131 136anti-parallel
Strand 4
A
82 85parallel
Strand 5
A
88 89anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 64first strand
Strand 2
A
68 73anti-parallel
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There are 25 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
496 499first strand
Strand 2
A
504 507anti-parallel
Strand 3
A
567 590parallel
Strand 4
A
531 550anti-parallel
Strand 5
A
515 528anti-parallel
Strand 6
A
475 486anti-parallel
Strand 7
A
456 470anti-parallel
Strand 8
A
418 432anti-parallel
Strand 9
A
397 415anti-parallel
Strand 10
A
369 386anti-parallel
Strand 11
A
345 363anti-parallel
Strand 12
A
324 342anti-parallel
Strand 13
A
302 317anti-parallel
Strand 14
A
223 237anti-parallel
Strand 15
A
207 218anti-parallel
Strand 16
A
177 188anti-parallel
Strand 17
A
163 172anti-parallel
Strand 18
A
148 157anti-parallel
Strand 19
A
725 734anti-parallel
Strand 20
A
694 702anti-parallel
Strand 21
A
677 689anti-parallel
Strand 22
A
653 661anti-parallel
Strand 23
A
639 647anti-parallel
Strand 24
A
593 607anti-parallel
Strand 25
A
630 631anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
496 499first strand
Strand 2
A
504 507anti-parallel
Strand 3
A
567 590parallel
Strand 4
A
593 607anti-parallel
Strand 5
A
630 631anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 251first strand
Strand 2
A
282 285anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
612 613first strand
Strand 2
A
624 625anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il