Analysis of interatomic Contacts of Structural Units in PDB entry:
4RDT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RDT entry

There are 2 chains in PDB entry 4RDT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 20PHE 734
B
 PRO 20ARG 724
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 4RDT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 43Right-handed alpha
Helix 2
2
A
48 54Right-handed alpha
Helix 3
3
A
77 81Right-handed 310
Helix 4
4
A
105 107Right-handed 310
Helix 5
5
A
117 123Right-handed 310
Helix 6
6
A
144 146Right-handed 310
Helix 7
7
A
489 495Right-handed alpha
Helix 8
8
B
39 43Right-handed alpha
Helix 9
9
B
48 54Right-handed alpha
Helix 10
10
B
77 81Right-handed 310
Helix 11
11
B
105 107Right-handed 310
Helix 12
12
B
117 123Right-handed 310
Helix 13
13
B
144 146Right-handed 310
Helix 14
14
B
489 495Right-handed alpha
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There are 8 sheets in PDB entry 4RDT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 38first strand
Strand 2
A
109 115anti-parallel
Strand 3
A
131 136anti-parallel
Strand 4
A
82 85parallel
Strand 5
A
88 89anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 64first strand
Strand 2
A
68 73anti-parallel
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There are 25 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
496 499first strand
Strand 2
A
504 507anti-parallel
Strand 3
A
567 587parallel
Strand 4
A
593 607anti-parallel
Strand 5
A
639 647anti-parallel
Strand 6
A
653 661anti-parallel
Strand 7
A
677 686anti-parallel
Strand 8
A
694 702anti-parallel
Strand 9
A
725 734anti-parallel
Strand 10
A
148 157anti-parallel
Strand 11
A
162 172anti-parallel
Strand 12
A
177 188anti-parallel
Strand 13
A
207 218anti-parallel
Strand 14
A
225 237anti-parallel
Strand 15
A
302 315anti-parallel
Strand 16
A
324 342anti-parallel
Strand 17
A
345 363anti-parallel
Strand 18
A
369 386anti-parallel
Strand 19
A
397 414anti-parallel
Strand 20
A
418 432anti-parallel
Strand 21
A
459 470anti-parallel
Strand 22
A
475 486anti-parallel
Strand 23
A
515 528anti-parallel
Strand 24
A
531 550anti-parallel
Strand 25
A
567 587anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 192first strand
Strand 2
A
201 202anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 38first strand
Strand 2
B
109 115anti-parallel
Strand 3
B
131 136anti-parallel
Strand 4
B
82 85parallel
Strand 5
B
88 89anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 64first strand
Strand 2
B
68 73anti-parallel
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There are 21 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
496 499first strand
Strand 2
B
504 507anti-parallel
Strand 3
B
567 587parallel
Strand 4
B
531 550anti-parallel
Strand 5
B
515 528anti-parallel
Strand 6
B
475 486anti-parallel
Strand 7
B
459 470anti-parallel
Strand 8
B
418 432anti-parallel
Strand 9
B
397 414anti-parallel
Strand 10
B
369 386anti-parallel
Strand 11
B
345 363anti-parallel
Strand 12
B
324 342anti-parallel
Strand 13
B
302 315anti-parallel
Strand 14
B
225 237anti-parallel
Strand 15
B
207 218anti-parallel
Strand 16
B
177 188anti-parallel
Strand 17
B
162 172anti-parallel
Strand 18
B
148 157anti-parallel
Strand 19
B
725 734anti-parallel
Strand 20
B
693 702anti-parallel
Strand 21
B
689 690anti-parallel
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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
496 499first strand
Strand 2
B
504 507anti-parallel
Strand 3
B
567 587parallel
Strand 4
B
593 607anti-parallel
Strand 5
B
639 647anti-parallel
Strand 6
B
653 661anti-parallel
Strand 7
B
677 686anti-parallel
Strand 8
B
693 702anti-parallel
Strand 9
B
689 690anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il