Analysis of interatomic Contacts of Structural Units in PDB entry:
4RDW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RDW entry

There is 1 chain in PDB entry 4RDW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LEU 452
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 4RDW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
58 65Right-handed 310
Helix 2
2
A
77 90Right-handed alpha
Helix 3
3
A
93 111Right-handed alpha
Helix 4
4
A
135 149Right-handed alpha
Helix 5
5
A
170 177Right-handed 310
Helix 6
6
A
179 198Right-handed alpha
Helix 7
7
A
212 221Right-handed alpha
Helix 8
8
A
236 248Right-handed alpha
Helix 9
9
A
250 259Right-handed alpha
Helix 10
10
A
274 285Right-handed alpha
Helix 11
11
A
291 298Right-handed alpha
Helix 12
12
A
304 311Right-handed alpha
Helix 13
13
A
326 343Right-handed alpha
Helix 14
14
A
355 373Right-handed alpha
Helix 15
15
A
394 399Right-handed alpha
Helix 16
16
A
401 413Right-handed alpha
Helix 17
17
A
414 416Right-handed 310
Helix 18
18
A
436 452Right-handed alpha
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There are 4 sheets in PDB entry 4RDW. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 33first strand
Strand 2
A
14 23anti-parallel
Strand 3
A
3 11anti-parallel
Strand 4
A
42 43parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 50first strand
Strand 2
A
387 390anti-parallel
Strand 3
A
418 423anti-parallel
Strand 4
A
426 429anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 57first strand
Strand 2
A
113 120parallel
Strand 3
A
151 156parallel
Strand 4
A
200 201parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 207first strand
Strand 2
A
229 233parallel
Strand 3
A
265 269parallel
Strand 4
A
287 290parallel
Strand 5
A
314 317parallel
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