Analysis of interatomic Contacts of Structural Units in PDB entry:
4RDZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RDZ entry

There are 4 chains in PDB entry 4RDZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0VAL 137
A
 ALA 139GLY 314
B
 GLY 0VAL 137
B
 ALA 139ARG 315
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 4RDZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 17Right-handed 310
Helix 2
2
A
30 37Right-handed alpha
Helix 3
3
A
38 41Right-handed 310
Helix 4
4
A
42 59Right-handed alpha
Helix 5
5
A
76 88Right-handed alpha
Helix 6
6
A
104 109Right-handed alpha
Helix 7
7
A
111 125Right-handed alpha
Helix 8
8
A
147 165Right-handed alpha
Helix 9
9
A
173 176Right-handed 310
Helix 10
10
A
177 189Right-handed alpha
Helix 11
11
A
192 194Right-handed 310
Helix 12
12
A
200 204Right-handed 310
Helix 13
13
A
206 215Right-handed alpha
Helix 14
14
A
232 246Right-handed alpha
Helix 15
15
A
248 250Right-handed 310
Helix 16
16
A
266 274Right-handed alpha
Helix 17
17
A
280 285Right-handed alpha
Helix 18
18
A
285 293Right-handed alpha
Helix 19
19
A
296 305Right-handed alpha
Helix 20
20
A
305 314Right-handed alpha
Helix 21
21
B
13 17Right-handed 310
Helix 22
22
B
30 37Right-handed alpha
Helix 23
23
B
38 41Right-handed 310
Helix 24
24
B
42 59Right-handed alpha
Helix 25
25
B
76 88Right-handed alpha
Helix 26
26
B
104 109Right-handed alpha
Helix 27
27
B
111 125Right-handed alpha
Helix 28
28
B
147 165Right-handed alpha
Helix 29
29
B
173 176Right-handed 310
Helix 30
30
B
177 189Right-handed alpha
Helix 31
31
B
192 194Right-handed 310
Helix 32
32
B
200 204Right-handed 310
Helix 33
33
B
206 215Right-handed alpha
Helix 34
34
B
232 246Right-handed alpha
Helix 35
35
B
248 250Right-handed 310
Helix 36
36
B
266 274Right-handed alpha
Helix 37
37
B
280 285Right-handed alpha
Helix 38
38
B
285 293Right-handed alpha
Helix 39
39
B
296 305Right-handed alpha
Helix 40
40
B
305 314Right-handed alpha
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There are 6 sheets in PDB entry 4RDZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
11 12anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 24first strand
Strand 2
A
64 67parallel
Strand 3
A
90 92parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 96first strand
Strand 2
A
137 140parallel
Strand 3
A
168 171parallel
Strand 4
A
196 198parallel
Strand 5
A
219 222parallel
Strand 6
A
252 254parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 5first strand
Strand 2
B
11 12anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 24first strand
Strand 2
B
64 67parallel
Strand 3
B
90 92parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 96first strand
Strand 2
B
137 140parallel
Strand 3
B
168 171parallel
Strand 4
B
196 198parallel
Strand 5
B
219 222parallel
Strand 6
B
252 254parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il