Analysis of interatomic Contacts of Structural Units in PDB entry:
4RGJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RGJ entry

There is 1 chain in PDB entry 4RGJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 39TYR 528
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 4RGJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
40 45Right-handed alpha
Helix 2
2
A
59 63Right-handed 310
Helix 3
3
A
111 123Right-handed alpha
Helix 4
4
A
155 162Right-handed alpha
Helix 5
5
A
166 187Right-handed alpha
Helix 6
6
A
195 197Right-handed 310
Helix 7
7
A
218 220Right-handed 310
Helix 8
8
A
233 237Right-handed 310
Helix 9
9
A
239 244Right-handed alpha
Helix 10
10
A
250 266Right-handed alpha
Helix 11
11
A
274 285Right-handed alpha
Helix 12
12
A
291 297Right-handed 310
Helix 13
13
A
298 309Right-handed alpha
Helix 14
14
A
312 316Right-handed 310
Helix 15
15
A
318 324Right-handed alpha
Helix 16
16
A
325 333Right-handed alpha
Helix 17
17
A
347 389Right-handed alpha
Helix 18
18
A
398 413Right-handed alpha
Helix 19
19
A
418 433Right-handed alpha
Helix 20
20
A
445 472Right-handed alpha
Helix 21
21
A
481 491Right-handed alpha
Helix 22
22
A
494 506Right-handed alpha
Helix 23
23
A
514 528Right-handed alpha
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There are 5 sheets in PDB entry 4RGJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 66first strand
Strand 2
A
70 79anti-parallel
Strand 3
A
82 89anti-parallel
Strand 4
A
95 102anti-parallel
Strand 5
A
142 147anti-parallel
Strand 6
A
133 138anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 108first strand
Strand 2
A
222 223anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 154first strand
Strand 2
A
199 202anti-parallel
Strand 3
A
210 213anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 397first strand
Strand 2
A
442 444anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
479 480first strand
Strand 2
A
512 513anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il