Analysis of interatomic Contacts of Structural Units in PDB entry:
4RH8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RH8 entry

There are 4 chains in PDB entry 4RH8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 28ASP 170
B
 GLN 28ASP 170
C
 GLN 28ASP 170
D
 GLN 28ASP 170
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 4RH8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 33Right-handed 310
Helix 2
2
A
45 58Right-handed alpha
Helix 3
3
A
140 157Right-handed alpha
Helix 4
4
A
158 169Right-handed alpha
Helix 5
5
B
30 33Right-handed 310
Helix 6
6
B
45 58Right-handed alpha
Helix 7
7
B
140 157Right-handed alpha
Helix 8
8
B
158 169Right-handed alpha
Helix 9
9
C
30 33Right-handed 310
Helix 10
10
C
45 58Right-handed alpha
Helix 11
11
C
140 157Right-handed alpha
Helix 12
12
C
158 169Right-handed alpha
Helix 13
13
D
30 33Right-handed 310
Helix 14
14
D
45 58Right-handed alpha
Helix 15
15
D
140 157Right-handed alpha
Helix 16
16
D
158 169Right-handed alpha
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There are 4 sheets in PDB entry 4RH8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
35 40parallel
Strand 3
A
74 90parallel
Strand 4
C
74 90anti-parallel
Strand 5
C
35 40parallel
Strand 6
C
61 63parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 126first strand
Strand 2
A
94 110anti-parallel
Strand 3
A
74 90anti-parallel
Strand 4
C
74 90anti-parallel
Strand 5
C
94 109anti-parallel
Strand 6
C
115 126anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 63first strand
Strand 2
B
35 40parallel
Strand 3
B
74 90parallel
Strand 4
D
74 90anti-parallel
Strand 5
D
35 40parallel
Strand 6
D
61 63parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 126first strand
Strand 2
B
94 110anti-parallel
Strand 3
B
74 90anti-parallel
Strand 4
D
74 90anti-parallel
Strand 5
D
94 110anti-parallel
Strand 6
D
114 126anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il