Analysis of interatomic Contacts of Structural Units in PDB entry:
4RID


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RID entry

There are 2 chains in PDB entry 4RID (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 370VAL 1009
B
 THR 370VAL 1009
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 4RID. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
373 388Right-handed alpha
Helix 2
2
A
389 394Right-handed alpha
Helix 3
3
A
397 409Right-handed alpha
Helix 4
4
A
411 423Right-handed alpha
Helix 5
5
A
443 453Right-handed alpha
Helix 6
6
A
460 462Right-handed 310
Helix 7
7
A
464 472Right-handed alpha
Helix 8
8
A
473 483Right-handed alpha
Helix 9
9
A
492 507Right-handed alpha
Helix 10
10
A
507 509Right-handed alpha
Helix 11
11
A
520 532Right-handed alpha
Helix 12
12
A
538 553Right-handed alpha
Helix 13
13
A
598 621Right-handed alpha
Helix 14
14
A
623 640Right-handed alpha
Helix 15
15
A
648 653Right-handed 310
Helix 16
16
A
654 659Right-handed alpha
Helix 17
17
A
661 680Right-handed alpha
Helix 18
18
A
682 695Right-handed alpha
Helix 19
19
A
700 702Right-handed 310
Helix 20
20
A
703 718Right-handed alpha
Helix 21
21
A
721 735Right-handed alpha
Helix 22
22
A
739 756Right-handed alpha
Helix 23
23
A
813 824Right-handed alpha
Helix 24
24
A
835 846Right-handed alpha
Helix 25
25
A
846 852Right-handed alpha
Helix 26
26
A
873 879Right-handed alpha
Helix 27
27
A
879 892Right-handed alpha
Helix 28
28
A
894 910Right-handed alpha
Helix 29
29
A
918 922Right-handed 310
Helix 30
30
A
924 955Right-handed alpha
Helix 31
31
A
984 997Right-handed alpha
Helix 32
32
B
373 388Right-handed alpha
Helix 33
33
B
389 394Right-handed alpha
Helix 34
34
B
397 409Right-handed alpha
Helix 35
35
B
411 423Right-handed alpha
Helix 36
36
B
443 453Right-handed alpha
Helix 37
37
B
460 462Right-handed 310
Helix 38
38
B
464 472Right-handed alpha
Helix 39
39
B
473 483Right-handed alpha
Helix 40
40
B
492 507Right-handed alpha
Helix 41
41
B
507 509Right-handed alpha
Helix 42
42
B
520 532Right-handed alpha
Helix 43
43
B
538 553Right-handed alpha
Helix 44
44
B
598 621Right-handed alpha
Helix 45
45
B
623 642Right-handed alpha
Helix 46
46
B
648 653Right-handed 310
Helix 47
47
B
654 659Right-handed alpha
Helix 48
48
B
661 680Right-handed alpha
Helix 49
49
B
682 695Right-handed alpha
Helix 50
50
B
700 702Right-handed 310
Helix 51
51
B
703 718Right-handed alpha
Helix 52
52
B
721 735Right-handed alpha
Helix 53
53
B
739 756Right-handed alpha
Helix 54
54
B
813 824Right-handed alpha
Helix 55
55
B
835 846Right-handed alpha
Helix 56
56
B
846 852Right-handed alpha
Helix 57
57
B
873 879Right-handed alpha
Helix 58
58
B
879 892Right-handed alpha
Helix 59
59
B
894 910Right-handed alpha
Helix 60
60
B
924 955Right-handed alpha
Helix 61
61
B
984 997Right-handed alpha
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There are 5 sheets in PDB entry 4RID. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
429 430first strand
Strand 2
A
534 537anti-parallel
Strand 3
A
456 458anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
779 783first strand
Strand 2
A
1001 1007parallel
Strand 3
A
971 977parallel
Strand 4
A
961 964anti-parallel
Strand 5
A
829 831anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
429 430first strand
Strand 2
B
534 537anti-parallel
Strand 3
B
456 458anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
779 783first strand
Strand 2
B
1001 1007parallel
Strand 3
B
971 977parallel
Strand 4
B
961 964anti-parallel
Strand 5
B
829 831anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
797 798first strand
Strand 2
B
811 812anti-parallel
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