Analysis of interatomic Contacts of Structural Units in PDB entry:
4RIT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RIT entry

There are 4 chains in PDB entry 4RIT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PHE 5GLN 303
B
 TRP 305GLY 480
A
 PHE 5GLN 303
A
 TRP 305ARG 477
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 40 helices in PDB entry 4RIT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
18 39Right-handed alpha
Helix 2
2
B
40 43Right-handed 310
Helix 3
3
B
64 78Right-handed alpha
Helix 4
4
B
96 110Right-handed alpha
Helix 5
5
B
122 138Right-handed alpha
Helix 6
6
B
150 168Right-handed alpha
Helix 7
7
B
191 200Right-handed alpha
Helix 8
8
B
203 205Right-handed 310
Helix 9
9
B
219 233Right-handed alpha
Helix 10
10
B
254 265Right-handed alpha
Helix 11
11
B
275 282Right-handed 310
Helix 12
12
B
285 290Right-handed 310
Helix 13
13
B
291 295Right-handed 310
Helix 14
14
B
301 306Right-handed alpha
Helix 15
15
B
321 326Right-handed alpha
Helix 16
16
B
342 347Right-handed 310
Helix 17
17
B
355 392Right-handed alpha
Helix 18
18
B
416 418Right-handed 310
Helix 19
19
B
419 434Right-handed alpha
Helix 20
20
B
460 476Right-handed alpha
Helix 21
21
A
18 39Right-handed alpha
Helix 22
22
A
40 43Right-handed 310
Helix 23
23
A
64 78Right-handed alpha
Helix 24
24
A
96 110Right-handed alpha
Helix 25
25
A
121 137Right-handed alpha
Helix 26
26
A
150 168Right-handed alpha
Helix 27
27
A
191 200Right-handed alpha
Helix 28
28
A
203 205Right-handed 310
Helix 29
29
A
219 233Right-handed alpha
Helix 30
30
A
254 265Right-handed alpha
Helix 31
31
A
275 282Right-handed 310
Helix 32
32
A
285 290Right-handed 310
Helix 33
33
A
291 295Right-handed 310
Helix 34
34
A
301 306Right-handed alpha
Helix 35
35
A
321 326Right-handed alpha
Helix 36
36
A
342 347Right-handed 310
Helix 37
37
A
355 392Right-handed alpha
Helix 38
38
A
416 418Right-handed 310
Helix 39
39
A
419 434Right-handed alpha
Helix 40
40
A
460 476Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 4RIT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 148first strand
Strand 2
B
313 317anti-parallel
Strand 3
B
297 300anti-parallel
Strand 4
B
268 272parallel
Strand 5
B
236 243parallel
Strand 6
B
181 186parallel
Strand 7
B
207 210parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
395 397first strand
Strand 2
B
405 410anti-parallel
Strand 3
B
450 453anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
443 444first strand
Strand 2
B
447 448anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 148first strand
Strand 2
A
313 317anti-parallel
Strand 3
A
297 300anti-parallel
Strand 4
A
268 272parallel
Strand 5
A
236 243parallel
Strand 6
A
181 186parallel
Strand 7
A
207 210parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 397first strand
Strand 2
A
405 410anti-parallel
Strand 3
A
450 453anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
443 444first strand
Strand 2
A
447 448anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il