Analysis of interatomic Contacts of Structural Units in PDB entry:
4RIW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RIW entry

There are 4 chains in PDB entry 4RIW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 680LYS 960
B
 LEU 664ASP 960
C
 VAL 680LYS 960
D
 LEU 664ASP 960
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 51 helices in PDB entry 4RIW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
686 688Right-handed 310
Helix 2
2
A
738 746Right-handed alpha
Helix 3
3
A
775 784Right-handed alpha
Helix 4
4
A
785 787Right-handed 310
Helix 5
5
A
788 809Right-handed alpha
Helix 6
6
A
836 840Right-handed 310
Helix 7
7
A
860 867Right-handed alpha
Helix 8
8
A
870 887Right-handed alpha
Helix 9
9
A
897 899Right-handed 310
Helix 10
10
A
900 908Right-handed alpha
Helix 11
11
A
918 929Right-handed alpha
Helix 12
12
A
938 951Right-handed alpha
Helix 13
13
A
952 956Right-handed 310
Helix 14
14
B
684 688Right-handed 310
Helix 15
15
B
730 745Right-handed alpha
Helix 16
16
B
774 781Right-handed alpha
Helix 17
17
B
786 807Right-handed alpha
Helix 18
18
B
815 817Right-handed 310
Helix 19
19
B
858 864Right-handed alpha
Helix 20
20
B
870 885Right-handed alpha
Helix 21
21
B
898 906Right-handed alpha
Helix 22
22
B
918 927Right-handed alpha
Helix 23
23
B
936 948Right-handed alpha
Helix 24
24
B
950 955Right-handed alpha
Helix 25
25
C
738 746Right-handed alpha
Helix 26
26
C
775 784Right-handed alpha
Helix 27
27
C
785 787Right-handed 310
Helix 28
28
C
788 809Right-handed alpha
Helix 29
29
C
836 840Right-handed 310
Helix 30
30
C
846 850Right-handed 310
Helix 31
31
C
854 858Right-handed 310
Helix 32
32
C
860 867Right-handed alpha
Helix 33
33
C
872 887Right-handed alpha
Helix 34
34
C
900 908Right-handed alpha
Helix 35
35
C
918 929Right-handed alpha
Helix 36
36
C
932 936Right-handed 310
Helix 37
37
C
938 951Right-handed alpha
Helix 38
38
C
952 957Right-handed alpha
Helix 39
39
D
684 688Right-handed 310
Helix 40
40
D
728 745Right-handed alpha
Helix 41
41
D
774 781Right-handed alpha
Helix 42
42
D
786 807Right-handed alpha
Helix 43
43
D
815 817Right-handed 310
Helix 44
44
D
853 857Right-handed 310
Helix 45
45
D
858 864Right-handed alpha
Helix 46
46
D
870 885Right-handed alpha
Helix 47
47
D
895 897Right-handed 310
Helix 48
48
D
898 906Right-handed alpha
Helix 49
49
D
918 927Right-handed alpha
Helix 50
50
D
936 948Right-handed alpha
Helix 51
51
D
950 955Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 4RIW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
690 698first strand
Strand 2
A
703 709anti-parallel
Strand 3
A
718 726anti-parallel
Strand 4
A
763 768anti-parallel
Strand 5
A
755 759anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
821 823first strand
Strand 2
A
829 831anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
692 696first strand
Strand 2
B
700 707anti-parallel
Strand 3
B
716 723anti-parallel
Strand 4
B
763 767anti-parallel
Strand 5
B
753 757anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
772 773first strand
Strand 2
B
819 823anti-parallel
Strand 3
B
826 829anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
809 810first strand
Strand 2
B
836 837anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
845 846first strand
Strand 2
B
866 867anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
690 698first strand
Strand 2
C
703 709anti-parallel
Strand 3
C
718 725anti-parallel
Strand 4
C
764 768anti-parallel
Strand 5
C
757 759anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
821 823first strand
Strand 2
C
829 831anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
692 696first strand
Strand 2
D
700 707anti-parallel
Strand 3
D
716 723anti-parallel
Strand 4
D
763 767anti-parallel
Strand 5
D
753 757anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
772 773first strand
Strand 2
D
819 823anti-parallel
Strand 3
D
826 829anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
809 810first strand
Strand 2
D
836 837anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
845 846first strand
Strand 2
D
866 867anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il