Analysis of interatomic Contacts of Structural Units in PDB entry:
4RJ0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RJ0 entry

There are 6 chains in PDB entry 4RJ0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASN -1GLN 303
B
 TRP 305GLY 476
A
 ARG 4GLN 303
A
 TRP 305GLY 476
C
 PHE 5GLN 303
C
 TRP 305GLU 383
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 80 helices in PDB entry 4RJ0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
-1 3Right-handed 310
Helix 2
2
B
18 39Right-handed alpha
Helix 3
3
B
40 43Right-handed 310
Helix 4
4
B
64 78Right-handed alpha
Helix 5
5
B
96 110Right-handed alpha
Helix 6
6
B
115 118Right-handed 310
Helix 7
7
B
119 137Right-handed alpha
Helix 8
8
B
150 168Right-handed alpha
Helix 9
9
B
191 200Right-handed alpha
Helix 10
10
B
203 205Right-handed 310
Helix 11
11
B
219 233Right-handed alpha
Helix 12
12
B
254 265Right-handed alpha
Helix 13
13
B
275 282Right-handed 310
Helix 14
14
B
285 290Right-handed 310
Helix 15
15
B
291 295Right-handed 310
Helix 16
16
B
321 326Right-handed alpha
Helix 17
17
B
342 347Right-handed 310
Helix 18
18
B
355 392Right-handed alpha
Helix 19
19
B
416 418Right-handed 310
Helix 20
20
B
419 434Right-handed alpha
Helix 21
21
B
460 475Right-handed alpha
Helix 22
22
A
18 39Right-handed alpha
Helix 23
23
A
40 43Right-handed 310
Helix 24
24
A
64 78Right-handed alpha
Helix 25
25
A
96 110Right-handed alpha
Helix 26
26
A
119 137Right-handed alpha
Helix 27
27
A
150 168Right-handed alpha
Helix 28
28
A
191 200Right-handed alpha
Helix 29
29
A
203 205Right-handed 310
Helix 30
30
A
219 233Right-handed alpha
Helix 31
31
A
254 265Right-handed alpha
Helix 32
32
A
275 282Right-handed 310
Helix 33
33
A
285 290Right-handed 310
Helix 34
34
A
291 295Right-handed 310
Helix 35
35
A
321 326Right-handed alpha
Helix 36
36
A
342 347Right-handed 310
Helix 37
37
A
355 391Right-handed alpha
Helix 38
38
A
416 418Right-handed 310
Helix 39
39
A
419 436Right-handed alpha
Helix 40
40
A
460 476Right-handed alpha
Helix 41
41
C
18 39Right-handed alpha
Helix 42
42
C
40 43Right-handed 310
Helix 43
43
C
64 78Right-handed alpha
Helix 44
44
C
96 110Right-handed alpha
Helix 45
45
C
115 118Right-handed 310
Helix 46
46
C
119 138Right-handed alpha
Helix 47
47
C
150 168Right-handed alpha
Helix 48
48
C
191 200Right-handed alpha
Helix 49
49
C
203 205Right-handed 310
Helix 50
50
C
219 233Right-handed alpha
Helix 51
51
C
254 265Right-handed alpha
Helix 52
52
C
275 282Right-handed 310
Helix 53
53
C
285 290Right-handed 310
Helix 54
54
C
291 295Right-handed 310
Helix 55
55
C
301 306Right-handed alpha
Helix 56
56
C
321 327Right-handed alpha
Helix 57
57
C
342 347Right-handed 310
Helix 58
58
C
355 392Right-handed alpha
Helix 59
59
C
416 434Right-handed alpha
Helix 60
60
C
460 476Right-handed alpha
Helix 61
61
D
18 39Right-handed alpha
Helix 62
62
D
40 43Right-handed 310
Helix 63
63
D
64 78Right-handed alpha
Helix 64
64
D
96 110Right-handed alpha
Helix 65
65
D
119 138Right-handed alpha
Helix 66
66
D
150 168Right-handed alpha
Helix 67
67
D
191 200Right-handed alpha
Helix 68
68
D
203 205Right-handed 310
Helix 69
69
D
219 233Right-handed alpha
Helix 70
70
D
254 265Right-handed alpha
Helix 71
71
D
275 282Right-handed 310
Helix 72
72
D
285 290Right-handed 310
Helix 73
73
D
291 295Right-handed 310
Helix 74
74
D
301 306Right-handed alpha
Helix 75
75
D
321 326Right-handed alpha
Helix 76
76
D
342 347Right-handed 310
Helix 77
77
D
355 392Right-handed alpha
Helix 78
78
D
416 418Right-handed 310
Helix 79
79
D
419 434Right-handed alpha
Helix 80
80
D
460 476Right-handed alpha
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There are 12 sheets in PDB entry 4RJ0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 148first strand
Strand 2
B
313 317anti-parallel
Strand 3
B
297 300anti-parallel
Strand 4
B
268 273parallel
Strand 5
B
236 243parallel
Strand 6
B
181 186parallel
Strand 7
B
207 210parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
395 397first strand
Strand 2
B
405 410anti-parallel
Strand 3
B
450 453anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
443 444first strand
Strand 2
B
447 448anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 148first strand
Strand 2
A
313 317anti-parallel
Strand 3
A
297 300anti-parallel
Strand 4
A
268 272parallel
Strand 5
A
236 243parallel
Strand 6
A
181 186parallel
Strand 7
A
207 210parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 397first strand
Strand 2
A
405 410anti-parallel
Strand 3
A
450 453anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
443 444first strand
Strand 2
A
447 448anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
144 148first strand
Strand 2
C
313 317anti-parallel
Strand 3
C
297 300anti-parallel
Strand 4
C
268 273parallel
Strand 5
C
236 243parallel
Strand 6
C
181 186parallel
Strand 7
C
207 210parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
395 397first strand
Strand 2
C
405 410anti-parallel
Strand 3
C
450 453anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
443 444first strand
Strand 2
C
447 448anti-parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
144 148first strand
Strand 2
D
313 317anti-parallel
Strand 3
D
297 300anti-parallel
Strand 4
D
268 272parallel
Strand 5
D
236 243parallel
Strand 6
D
181 186parallel
Strand 7
D
207 210parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
395 397first strand
Strand 2
D
405 410anti-parallel
Strand 3
D
450 453anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
443 444first strand
Strand 2
D
447 448anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il