Analysis of interatomic Contacts of Structural Units in PDB entry:
4RJI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RJI entry

There are 4 chains in PDB entry 4RJI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 15LYS 560
B
 ASN 15MET 566
C
 LYS 14THR 568
D
 LYS 14THR 568
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are127 helices in PDB entry 4RJI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 28Right-handed alpha
Helix 2
2
A
41 48Right-handed alpha
Helix 3
3
A
60 76Right-handed alpha
Helix 4
4
A
86 91Right-handed alpha
Helix 5
5
A
91 101Right-handed alpha
Helix 6
6
A
114 118Right-handed 310
Helix 7
7
A
127 132Right-handed alpha
Helix 8
8
A
133 136Right-handed 310
Helix 9
9
A
144 146Right-handed 310
Helix 10
10
A
147 161Right-handed alpha
Helix 11
11
A
173 178Right-handed alpha
Helix 12
12
A
197 210Right-handed alpha
Helix 13
13
A
220 223Right-handed 310
Helix 14
14
A
224 239Right-handed alpha
Helix 15
15
A
246 249Right-handed 310
Helix 16
16
A
253 258Right-handed 310
Helix 17
17
A
270 279Right-handed alpha
Helix 18
18
A
293 298Right-handed alpha
Helix 19
19
A
328 340Right-handed alpha
Helix 20
20
A
346 364Right-handed alpha
Helix 21
21
A
376 386Right-handed alpha
Helix 22
22
A
399 409Right-handed alpha
Helix 23
23
A
428 440Right-handed alpha
Helix 24
24
A
451 455Right-handed alpha
Helix 25
25
A
457 459Right-handed 310
Helix 26
26
A
460 468Right-handed alpha
Helix 27
27
A
481 492Right-handed alpha
Helix 28
28
A
504 512Right-handed alpha
Helix 29
29
A
521 523Right-handed 310
Helix 30
30
A
524 535Right-handed alpha
Helix 31
31
A
549 555Right-handed 310
Helix 32
32
B
16 28Right-handed alpha
Helix 33
33
B
41 48Right-handed alpha
Helix 34
34
B
60 76Right-handed alpha
Helix 35
35
B
86 91Right-handed alpha
Helix 36
36
B
92 102Right-handed alpha
Helix 37
37
B
114 118Right-handed 310
Helix 38
38
B
127 132Right-handed alpha
Helix 39
39
B
133 136Right-handed 310
Helix 40
40
B
144 146Right-handed 310
Helix 41
41
B
147 161Right-handed alpha
Helix 42
42
B
173 178Right-handed alpha
Helix 43
43
B
197 210Right-handed alpha
Helix 44
44
B
220 223Right-handed 310
Helix 45
45
B
224 239Right-handed alpha
Helix 46
46
B
246 249Right-handed 310
Helix 47
47
B
254 258Right-handed 310
Helix 48
48
B
270 279Right-handed alpha
Helix 49
49
B
293 298Right-handed alpha
Helix 50
50
B
328 340Right-handed alpha
Helix 51
51
B
346 364Right-handed alpha
Helix 52
52
B
376 386Right-handed alpha
Helix 53
53
B
399 409Right-handed alpha
Helix 54
54
B
428 440Right-handed alpha
Helix 55
55
B
451 455Right-handed alpha
Helix 56
56
B
456 459Right-handed 310
Helix 57
57
B
460 468Right-handed alpha
Helix 58
58
B
481 490Right-handed alpha
Helix 59
59
B
504 512Right-handed alpha
Helix 60
60
B
524 534Right-handed alpha
Helix 61
61
B
549 555Right-handed 310
Helix 62
62
B
556 566Right-handed alpha
Helix 63
63
C
16 28Right-handed alpha
Helix 64
64
C
41 48Right-handed alpha
Helix 65
65
C
60 76Right-handed alpha
Helix 66
66
C
86 91Right-handed alpha
Helix 67
67
C
92 102Right-handed alpha
Helix 68
68
C
114 118Right-handed 310
Helix 69
69
C
127 133Right-handed alpha
Helix 70
70
C
134 136Right-handed 310
Helix 71
71
C
144 146Right-handed 310
Helix 72
72
C
147 161Right-handed alpha
Helix 73
73
C
173 178Right-handed alpha
Helix 74
74
C
197 210Right-handed alpha
Helix 75
75
C
220 223Right-handed 310
Helix 76
76
C
224 239Right-handed alpha
Helix 77
77
C
246 249Right-handed 310
Helix 78
78
C
253 258Right-handed 310
Helix 79
79
C
270 279Right-handed alpha
Helix 80
80
C
293 298Right-handed alpha
Helix 81
81
C
328 340Right-handed alpha
Helix 82
82
C
346 364Right-handed alpha
Helix 83
83
C
376 388Right-handed alpha
Helix 84
84
C
399 409Right-handed alpha
Helix 85
85
C
428 440Right-handed alpha
Helix 86
86
C
451 455Right-handed alpha
Helix 87
87
C
457 459Right-handed 310
Helix 88
88
C
460 468Right-handed alpha
Helix 89
89
C
481 493Right-handed alpha
Helix 90
90
C
504 512Right-handed alpha
Helix 91
91
C
521 523Right-handed 310
Helix 92
92
C
524 535Right-handed alpha
Helix 93
93
C
549 555Right-handed 310
Helix 94
94
C
556 568Right-handed alpha
Helix 95
95
D
16 28Right-handed alpha
Helix 96
96
D
41 48Right-handed alpha
Helix 97
97
D
60 76Right-handed alpha
Helix 98
98
D
86 91Right-handed alpha
Helix 99
99
D
92 102Right-handed alpha
Helix 100
100
D
114 118Right-handed 310
Helix 101
101
D
127 132Right-handed alpha
Helix 102
102
D
133 136Right-handed 310
Helix 103
103
D
144 146Right-handed 310
Helix 104
104
D
147 161Right-handed alpha
Helix 105
105
D
173 178Right-handed alpha
Helix 106
106
D
197 210Right-handed alpha
Helix 107
107
D
220 223Right-handed 310
Helix 108
108
D
224 239Right-handed alpha
Helix 109
109
D
246 249Right-handed 310
Helix 110
110
D
253 258Right-handed 310
Helix 111
111
D
270 279Right-handed alpha
Helix 112
112
D
288 292Right-handed 310
Helix 113
113
D
293 298Right-handed alpha
Helix 114
114
D
328 340Right-handed alpha
Helix 115
115
D
346 364Right-handed alpha
Helix 116
116
D
376 387Right-handed alpha
Helix 117
117
D
399 409Right-handed alpha
Helix 118
118
D
428 440Right-handed alpha
Helix 119
119
D
451 455Right-handed alpha
Helix 120
120
D
456 459Right-handed 310
Helix 121
121
D
460 468Right-handed alpha
Helix 122
122
D
481 492Right-handed alpha
Helix 123
123
D
504 512Right-handed alpha
Helix 124
124
D
521 523Right-handed 310
Helix 125
125
D
524 534Right-handed alpha
Helix 126
126
D
549 555Right-handed 310
Helix 127
127
D
556 568Right-handed alpha
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There are 12 sheets in PDB entry 4RJI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 57first strand
Strand 2
A
32 35parallel
Strand 3
A
79 83parallel
Strand 4
A
106 112parallel
Strand 5
A
166 172parallel
Strand 6
A
138 141parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 263first strand
Strand 2
A
242 244parallel
Strand 3
A
214 218parallel
Strand 4
A
281 285parallel
Strand 5
A
304 309parallel
Strand 6
A
323 326parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 418first strand
Strand 2
A
394 396parallel
Strand 3
A
445 450parallel
Strand 4
A
471 477parallel
Strand 5
A
539 544parallel
Strand 6
A
515 518parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 57first strand
Strand 2
B
32 35parallel
Strand 3
B
79 83parallel
Strand 4
B
106 112parallel
Strand 5
B
166 172parallel
Strand 6
B
138 141parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
260 263first strand
Strand 2
B
242 244parallel
Strand 3
B
214 218parallel
Strand 4
B
281 285parallel
Strand 5
B
304 309parallel
Strand 6
B
323 326parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
417 418first strand
Strand 2
B
394 396parallel
Strand 3
B
445 450parallel
Strand 4
B
471 477parallel
Strand 5
B
539 544parallel
Strand 6
B
515 518parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
54 57first strand
Strand 2
C
32 35parallel
Strand 3
C
79 83parallel
Strand 4
C
106 112parallel
Strand 5
C
166 172parallel
Strand 6
C
138 141parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
260 263first strand
Strand 2
C
242 244parallel
Strand 3
C
214 218parallel
Strand 4
C
281 285parallel
Strand 5
C
304 309parallel
Strand 6
C
323 326parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
417 418first strand
Strand 2
C
394 396parallel
Strand 3
C
445 450parallel
Strand 4
C
471 477parallel
Strand 5
C
539 544parallel
Strand 6
C
515 518parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
54 57first strand
Strand 2
D
32 35parallel
Strand 3
D
79 83parallel
Strand 4
D
106 112parallel
Strand 5
D
166 172parallel
Strand 6
D
138 141parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
260 263first strand
Strand 2
D
242 244parallel
Strand 3
D
214 218parallel
Strand 4
D
281 285parallel
Strand 5
D
304 309parallel
Strand 6
D
323 326parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
417 418first strand
Strand 2
D
393 396parallel
Strand 3
D
445 450parallel
Strand 4
D
471 477parallel
Strand 5
D
539 544parallel
Strand 6
D
515 518parallel
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