Analysis of interatomic Contacts of Structural Units in PDB entry:
4RJY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RJY entry

There are 8 chains in PDB entry 4RJY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 196
A
 GLY 198ALA 332
B
 MET 1SER 196
B
 GLY 198ALA 332
C
 MET 1SER 196
C
 GLY 198ALA 332
D
 MET 1SER 196
D
 GLY 198ALA 332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 4RJY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 23Right-handed alpha
Helix 2
2
A
33 48Right-handed alpha
Helix 3
3
A
57 70Right-handed alpha
Helix 4
4
A
90 95Right-handed alpha
Helix 5
5
A
112 118Right-handed alpha
Helix 6
6
A
145 159Right-handed alpha
Helix 7
7
A
169 178Right-handed alpha
Helix 8
8
A
181 186Right-handed alpha
Helix 9
9
A
210 224Right-handed alpha
Helix 10
10
A
231 245Right-handed alpha
Helix 11
11
A
248 266Right-handed alpha
Helix 12
12
A
286 296Right-handed alpha
Helix 13
13
A
316 332Right-handed alpha
Helix 14
14
B
6 10Right-handed 310
Helix 15
15
B
13 23Right-handed alpha
Helix 16
16
B
33 48Right-handed alpha
Helix 17
17
B
57 70Right-handed alpha
Helix 18
18
B
82 87Right-handed alpha
Helix 19
19
B
90 95Right-handed alpha
Helix 20
20
B
112 118Right-handed alpha
Helix 21
21
B
138 142Right-handed 310
Helix 22
22
B
145 159Right-handed alpha
Helix 23
23
B
169 178Right-handed alpha
Helix 24
24
B
180 186Right-handed alpha
Helix 25
25
B
210 224Right-handed alpha
Helix 26
26
B
231 245Right-handed alpha
Helix 27
27
B
248 265Right-handed alpha
Helix 28
28
B
283 297Right-handed alpha
Helix 29
29
B
316 331Right-handed alpha
Helix 30
30
C
6 10Right-handed 310
Helix 31
31
C
13 23Right-handed alpha
Helix 32
32
C
33 48Right-handed alpha
Helix 33
33
C
57 70Right-handed alpha
Helix 34
34
C
90 97Right-handed alpha
Helix 35
35
C
112 119Right-handed alpha
Helix 36
36
C
145 159Right-handed alpha
Helix 37
37
C
169 178Right-handed alpha
Helix 38
38
C
181 186Right-handed alpha
Helix 39
39
C
210 224Right-handed alpha
Helix 40
40
C
231 245Right-handed alpha
Helix 41
41
C
248 266Right-handed alpha
Helix 42
42
C
286 297Right-handed alpha
Helix 43
43
C
316 331Right-handed alpha
Helix 44
44
D
13 23Right-handed alpha
Helix 45
45
D
33 48Right-handed alpha
Helix 46
46
D
57 70Right-handed alpha
Helix 47
47
D
82 87Right-handed alpha
Helix 48
48
D
90 95Right-handed alpha
Helix 49
49
D
112 118Right-handed alpha
Helix 50
50
D
145 159Right-handed alpha
Helix 51
51
D
169 178Right-handed alpha
Helix 52
52
D
181 186Right-handed alpha
Helix 53
53
D
210 224Right-handed alpha
Helix 54
54
D
231 245Right-handed alpha
Helix 55
55
D
248 266Right-handed alpha
Helix 56
56
D
286 297Right-handed alpha
Helix 57
57
D
316 332Right-handed alpha
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There are 12 sheets in PDB entry 4RJY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
299 300parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 55first strand
Strand 2
A
205 209anti-parallel
Strand 3
A
190 194anti-parallel
Strand 4
A
162 166parallel
Strand 5
A
129 136parallel
Strand 6
A
74 79parallel
Strand 7
A
99 103parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 274first strand
Strand 2
A
277 281anti-parallel
Strand 3
A
306 310anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 3first strand
Strand 2
B
299 300parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 55first strand
Strand 2
B
205 209anti-parallel
Strand 3
B
190 194anti-parallel
Strand 4
B
162 166parallel
Strand 5
B
129 136parallel
Strand 6
B
74 79parallel
Strand 7
B
99 103parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
270 274first strand
Strand 2
B
277 281anti-parallel
Strand 3
B
306 310anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 3first strand
Strand 2
C
299 300parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 55first strand
Strand 2
C
205 209anti-parallel
Strand 3
C
190 194anti-parallel
Strand 4
C
162 166parallel
Strand 5
C
129 136parallel
Strand 6
C
74 79parallel
Strand 7
C
99 103parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
270 274first strand
Strand 2
C
277 281anti-parallel
Strand 3
C
306 310anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 3first strand
Strand 2
D
299 300parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
51 55first strand
Strand 2
D
205 209anti-parallel
Strand 3
D
190 194anti-parallel
Strand 4
D
162 166parallel
Strand 5
D
129 136parallel
Strand 6
D
74 79parallel
Strand 7
D
99 103parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
269 274first strand
Strand 2
D
277 281anti-parallel
Strand 3
D
306 310anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il