Analysis of interatomic Contacts of Structural Units in PDB entry:
4RLT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4RLT entry

There are 2 chains in PDB entry 4RLT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1ALA 157
B
 GLY -4ALA 142
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 4RLT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 8Right-handed 310
Helix 2
2
A
21 32Right-handed alpha
Helix 3
3
A
36 40Right-handed 310
Helix 4
4
A
41 48Right-handed alpha
Helix 5
5
A
60 75Right-handed alpha
Helix 6
6
B
5 9Right-handed 310
Helix 7
7
B
23 35Right-handed alpha
Helix 8
8
B
38 42Right-handed 310
Helix 9
9
B
43 50Right-handed alpha
Helix 10
10
B
58 75Right-handed alpha
Helix 11
11
B
76 78Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 4RLT. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 13first strand
Strand 2
A
102 115anti-parallel
Strand 3
A
118 129anti-parallel
Strand 4
A
134 144anti-parallel
Strand 5
A
84 93anti-parallel
Strand 6
B
80 87anti-parallel
Strand 7
B
132 140anti-parallel
Strand 8
B
117 126anti-parallel
Strand 9
B
100 112anti-parallel
Strand 10
B
18 22anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
A
102 115anti-parallel
Strand 3
A
118 129anti-parallel
Strand 4
A
134 144anti-parallel
Strand 5
A
84 93anti-parallel
Strand 6
B
80 87anti-parallel
Strand 7
B
132 140anti-parallel
Strand 8
B
117 126anti-parallel
Strand 9
B
129 130anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 79first strand
Strand 2
A
153 155anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il